CRISPRone

CRISPRone report for GCA_005844845.1_ASM584484v1

♦ Seq 1: SPGY01000025.1 Bacteroides fragilis strain 1001175st1_C3 NODE_25_length_46412_cov_24.0416, whole genome shotgun sequence

⇒Summary: seq-len = 46412 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 20101-29276 bp Zoom in on locus 1 x21 CRISPR array Location: 20101-21416 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 20101-21416 bp Num of repeats: 21 Spacers: s1-s20 Gene: cd09725:cas2 Type: universal Location: 21629-21892 bp Gene: cd09722:cas1 Type: universal Location: 21895-22908 bp Gene: pfam01930:cas4 Type: Type-I Location: 22905-23417 bp Gene: mkCas0088:cas7 Type: Subtype-I-B Location: 23482-24540 bp Gene: mkCas0111:cas8b6 Type: Subtype-I-B Location: 24553-25878 bp Gene: COG1203:cas3 Type: Type-I Location: 25882-28041 bp Gene: mkCas0069:cas5 Type: Subtype-I-B Location: 28031-28594 bp Gene: cd09652:cas6 Type: other Location: 28606-28893 bp Gene: cd09652:cas6 Type: other Location: 28932-29276 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 20101-21416 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: SPGY01000011.1 Bacteroides fragilis strain 1001175st1_C3 NODE_11_length_152533_cov_35.0593, whole genome shotgun sequence

⇒Summary: seq-len = 152533 bp; # of CRISPR array = 1; # of cas gene = 3  (type II) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1119-8463 bp Zoom in on locus 1 x7 CRISPR array Location: 1119-1627 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 1119-1627 bp Num of repeats: 7 Spacers: s1-s6 Gene: pfam09827:cas2 Type: Subtype-II-C Location: 1737-2069 bp Gene: cd09720:cas1 Type: Subtype-II-C Location: 2073-3005 bp Gene: unk Type: unknown Location: 3125-3433 bp Gene: unk Type: unknown Location: 3500-4024 bp Gene: cd09643:cas9 Type: Subtype-II-C Location: 4040-8350 bp antiRepeat Location: 8418-8463 bp Strand: - Match length: 26 bp Mismatch: 21 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1119-1627 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: SPGY01000003.1 Bacteroides fragilis strain 1001175st1_C3 NODE_3_length_525662_cov_33.5661, whole genome shotgun sequence

⇒Summary: seq-len = 525662 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 75208-78821 bp Zoom in on locus 1 Gene: cd09692:cas5 Type: Subtype-I-B Location: 75208-75876 bp Gene: unk Type: unknown Location: 75879-76652 bp Gene: unk Type: unknown Location: 76660-77925 bp Gene: pfam13280:WYL Type: other Location: 77922-78821 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)