CRISPRone

CRISPRone report for GCA_006379335.1_ASM637933v1

♦ Seq 1: PZQX01000002.1 Clostridioides difficile strain 20266 u00000crpx_c_020266, whole genome shotgun sequence

⇒Summary: seq-len = 4080499 bp; # of CRISPR array = 9; # of cas gene = 15  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1312377-1313327 bp 2 Locus 2: 1524296-1525575 bp 3 Locus 3: 1635921-1636937 bp 4 Locus 4: 1718296-1718588 bp 5 Locus 5: 1855539-1856817 bp 6 Locus 6: 2174108-2174400 bp 7 Locus 7: 2536846-2537267 bp 8 Locus 8: 2702798-2710663 bp 9 Locus 9: 2785825-2786319 bp 10 Locus 10: 3282702-3293951 bp Zoom in on locus 1 x15 Zoom in on locus 2 x20 Zoom in on locus 3 x16 Zoom in on locus 4 x5 Zoom in on locus 5 x20 Zoom in on locus 6 x5 Zoom in on locus 7 x7 Zoom in on locus 8 Zoom in on locus 9 x8 Zoom in on locus 10 x26 CRISPR array Location: 1312377-1313327 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 1312377-1313327 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 1524296-1525575 bp Num of repeats: 20 Spacers: s15-s33 CRISPR array Location: 1524296-1525575 bp Num of repeats: 20 Spacers: s15-s33 CRISPR array Location: 1635921-1636937 bp Num of repeats: 16 Spacers: s34-s48 CRISPR array Location: 1635921-1636937 bp Num of repeats: 16 Spacers: s34-s48 CRISPR array Location: 1718296-1718588 bp Num of repeats: 5 Spacers: s49-s52 CRISPR array Location: 1718296-1718588 bp Num of repeats: 5 Spacers: s49-s52 CRISPR array Location: 1855539-1856817 bp Num of repeats: 20 Spacers: s53-s71 CRISPR array Location: 1855539-1856817 bp Num of repeats: 20 Spacers: s53-s71 CRISPR array Location: 2174108-2174400 bp Num of repeats: 5 Spacers: s72-s75 CRISPR array Location: 2174108-2174400 bp Num of repeats: 5 Spacers: s72-s75 CRISPR array Location: 2536846-2537267 bp Num of repeats: 7 Spacers: s76-s81 CRISPR array Location: 2536846-2537267 bp Num of repeats: 7 Spacers: s76-s81 Gene: cd09641:cas3HD Type: Type-I Location: 2702798-2705206 bp Gene: cd09693:cas5 Type: Type-I Location: 2705233-2706030 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2706046-2707059 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 2707079-2708554 bp Gene: pfam01881:cas6 Type: other Location: 2708559-2709296 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 2709554-2710663 bp CRISPR array Location: 2785825-2786319 bp Num of repeats: 8 Spacers: s82-s88 CRISPR array Location: 2785825-2786319 bp Num of repeats: 8 Spacers: s82-s88 CRISPR array Location: 3282702-3284356 bp Num of repeats: 26 Spacers: s89-s113 CRISPR array Location: 3282702-3284356 bp Num of repeats: 26 Spacers: s89-s113 Gene: cd09725:cas2 Type: universal Location: 3284540-3284806 bp Gene: cd09722:cas1 Type: universal Location: 3284809-3285789 bp Gene: pfam01930:cas4 Type: Type-I Location: 3285792-3286310 bp Gene: cd09641:cas3HD Type: Type-I Location: 3286358-3288679 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 3288690-3289391 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 3289393-3290307 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 3290309-3292159 bp Gene: pfam01881:cas6 Type: other Location: 3292165-3292902 bp Gene: pfam13280:WYL Type: other Location: 3292980-3293951 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1312377-1313327 bp]: array | spacers
           [Locus range 1524296-1525575 bp]: array | spacers
           [Locus range 1635921-1636937 bp]: array | spacers
           [Locus range 1718296-1718588 bp]: array | spacers
           [Locus range 1855539-1856817 bp]: array | spacers
           [Locus range 2174108-2174400 bp]: array | spacers
           [Locus range 2536846-2537267 bp]: array | spacers
           [Locus range 2785825-2786319 bp]: array | spacers
           [Locus range 3282702-3284356 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)