CRISPRone

CRISPRone report for GCA_006379355.1_ASM637935v1

♦ Seq 1: PZRL01000001.1 Clostridioides difficile strain 20690 u00000xxpx_o_020690, whole genome shotgun sequence

⇒Summary: seq-len = 4167947 bp; # of CRISPR array = 11; # of cas gene = 15  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 515103-518674 bp 2 Locus 2: 857603-857697 bp 3 Locus 3: 1066625-1077442 bp 4 Locus 4: 1657536-1665882 bp 5 Locus 5: 1827813-1828567 bp 6 Locus 6: 2216095-2216256 bp 7 Locus 7: 2537809-2538891 bp 8 Locus 8: 2717503-2718057 bp 9 Locus 9: 2828383-2828805 bp 10 Locus 10: 3040425-3041503 bp Zoom in on locus 1 x11 x4 x3 Zoom in on locus 2 x2 Zoom in on locus 3 x20 Zoom in on locus 4 Zoom in on locus 5 x12 Zoom in on locus 6 x3 Zoom in on locus 7 x17 Zoom in on locus 8 x9 Zoom in on locus 9 x7 Zoom in on locus 10 x17 CRISPR array Location: 515103-515786 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 515103-515786 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 518142-518369 bp Num of repeats: 4 Spacers: s11-s13 CRISPR array Location: 518142-518369 bp Num of repeats: 4 Spacers: s11-s13 CRISPR array Location: 518513-518674 bp Num of repeats: 3 Spacers: s14-s15 CRISPR array Location: 518513-518674 bp Num of repeats: 3 Spacers: s14-s15 CRISPR array Location: 857603-857697 bp Num of repeats: 2 Spacers: s16-s16 CRISPR array Location: 857603-857697 bp Num of repeats: 2 Spacers: s16-s16 Gene: pfam13280:WYL Type: other Location: 1066625-1067512 bp Gene: pfam01881:cas6 Type: other Location: 1067590-1068327 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 1068333-1070210 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 1070212-1071126 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 1071128-1071829 bp Gene: cd09641:cas3HD Type: Type-I Location: 1071840-1074161 bp Gene: pfam01930:cas4 Type: Type-I Location: 1074176-1074727 bp Gene: cd09722:cas1 Type: universal Location: 1074730-1075710 bp Gene: cd09725:cas2 Type: universal Location: 1075713-1075979 bp CRISPR array Location: 1076163-1077442 bp Num of repeats: 20 Spacers: s17-s35 CRISPR array Location: 1076163-1077442 bp Num of repeats: 20 Spacers: s17-s35 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 1657536-1658645 bp Gene: unk Type: unknown Location: 1659104-1659280 bp Gene: pfam01881:cas6 Type: other Location: 1659381-1660118 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 1660123-1661598 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 1661618-1662634 bp Gene: cd09693:cas5 Type: Type-I Location: 1662650-1663447 bp Gene: cd09641:cas3HD Type: Type-I Location: 1663474-1665882 bp CRISPR array Location: 1827813-1828567 bp Num of repeats: 12 Spacers: s36-s46 CRISPR array Location: 1827813-1828567 bp Num of repeats: 12 Spacers: s36-s46 CRISPR array Location: 2216095-2216256 bp Num of repeats: 3 Spacers: s47-s48 CRISPR array Location: 2216095-2216256 bp Num of repeats: 3 Spacers: s47-s48 CRISPR array Location: 2537809-2538891 bp Num of repeats: 17 Spacers: s49-s64 CRISPR array Location: 2537809-2538891 bp Num of repeats: 17 Spacers: s49-s64 CRISPR array Location: 2717503-2718057 bp Num of repeats: 9 Spacers: s65-s72 CRISPR array Location: 2717503-2718057 bp Num of repeats: 9 Spacers: s65-s72 CRISPR array Location: 2828383-2828805 bp Num of repeats: 7 Spacers: s73-s78 CRISPR array Location: 2828383-2828805 bp Num of repeats: 7 Spacers: s73-s78 CRISPR array Location: 3040425-3041503 bp Num of repeats: 17 Spacers: s79-s94 CRISPR array Location: 3040425-3041503 bp Num of repeats: 17 Spacers: s79-s94 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 515103-515786 bp]: array | spacers
           [Locus range 518142-518369 bp]: array | spacers
           [Locus range 518513-518674 bp]: array | spacers
           [Locus range 857603-857697 bp]: array | spacers
           [Locus range 1076163-1077442 bp]: array | spacers
           [Locus range 1827813-1828567 bp]: array | spacers
           [Locus range 2216095-2216256 bp]: array | spacers
           [Locus range 2537809-2538891 bp]: array | spacers
           [Locus range 2717503-2718057 bp]: array | spacers
           [Locus range 2828383-2828805 bp]: array | spacers
           [Locus range 3040425-3041503 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)