CRISPRone

CRISPRone report for GCA_006380825.1_ASM638082v1

♦ Seq 1: PZQY01000002.1 Clostridioides difficile strain 20476 u00000crpx_c_020476, whole genome shotgun sequence

⇒Summary: seq-len = 4103144 bp; # of CRISPR array = 8; # of cas gene = 14  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1300186-1300479 bp 2 Locus 2: 1508621-1509042 bp 3 Locus 3: 1619336-1619563 bp 4 Locus 4: 1794893-1795254 bp 5 Locus 5: 2113114-2113275 bp 6 Locus 6: 2268730-2280720 bp 7 Locus 7: 2470223-2470973 bp 8 Locus 8: 2632941-2640806 bp 9 Locus 9: 2714054-2714611 bp Zoom in on locus 1 x5 Zoom in on locus 2 x7 Zoom in on locus 3 x4 Zoom in on locus 4 x6 Zoom in on locus 5 x3 Zoom in on locus 6 x45 Zoom in on locus 7 x12 Zoom in on locus 8 Zoom in on locus 9 x9 CRISPR array Location: 1300186-1300479 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 1300186-1300479 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 1508621-1509042 bp Num of repeats: 7 Spacers: s5-s10 CRISPR array Location: 1508621-1509042 bp Num of repeats: 7 Spacers: s5-s10 CRISPR array Location: 1619336-1619563 bp Num of repeats: 4 Spacers: s11-s13 CRISPR array Location: 1619336-1619563 bp Num of repeats: 4 Spacers: s11-s13 CRISPR array Location: 1794893-1795254 bp Num of repeats: 6 Spacers: s14-s18 CRISPR array Location: 1794893-1795254 bp Num of repeats: 6 Spacers: s14-s18 CRISPR array Location: 2113114-2113275 bp Num of repeats: 3 Spacers: s19-s20 CRISPR array Location: 2113114-2113275 bp Num of repeats: 3 Spacers: s19-s20 Gene: cd09725:cas2 Type: universal Location: 2268730-2269020 bp Gene: cd09722:cas1 Type: universal Location: 2269231-2270238 bp Gene: pfam01930:cas4 Type: Type-I Location: 2270264-2270758 bp CRISPR array Location: 2270843-2273778 bp Num of repeats: 45 Spacers: s21-s64 CRISPR array Location: 2270843-2273778 bp Num of repeats: 45 Spacers: s21-s64 Gene: cd09641:cas3HD Type: Type-I Location: 2273968-2276526 bp Gene: cd09693:cas5 Type: Type-I Location: 2276550-2277290 bp Gene: pfam05107:cas7b Type: Type-I Location: 2277292-2278281 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 2278274-2280013 bp Gene: cd09652:cas6 Type: other Location: 2280025-2280720 bp CRISPR array Location: 2470223-2470973 bp Num of repeats: 12 Spacers: s65-s75 CRISPR array Location: 2470223-2470973 bp Num of repeats: 12 Spacers: s65-s75 Gene: cd09641:cas3HD Type: Type-I Location: 2632941-2635349 bp Gene: cd09693:cas5 Type: Type-I Location: 2635376-2636173 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2636189-2637202 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 2637222-2638697 bp Gene: pfam01881:cas6 Type: other Location: 2638702-2639439 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 2639697-2640806 bp CRISPR array Location: 2714054-2714611 bp Num of repeats: 9 Spacers: s76-s83 CRISPR array Location: 2714054-2714611 bp Num of repeats: 9 Spacers: s76-s83 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1300186-1300479 bp]: array | spacers
           [Locus range 1508621-1509042 bp]: array | spacers
           [Locus range 1619336-1619563 bp]: array | spacers
           [Locus range 1794893-1795254 bp]: array | spacers
           [Locus range 2113114-2113275 bp]: array | spacers
           [Locus range 2270843-2273778 bp]: array | spacers
           [Locus range 2470223-2470973 bp]: array | spacers
           [Locus range 2714054-2714611 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)