CRISPRone

CRISPRone report for GCA_006380835.1_ASM638083v1

♦ Seq 1: PZQZ01000003.1 Clostridioides difficile strain 20922 u00000crpx_c_020922, whole genome shotgun sequence

⇒Summary: seq-len = 4091280 bp; # of CRISPR array = 11; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1305800-1306025 bp 2 Locus 2: 1514047-1514539 bp 3 Locus 3: 1624867-1625491 bp 4 Locus 4: 1717104-1720981 bp 5 Locus 5: 1855384-1856403 bp 6 Locus 6: 2174219-2174380 bp 7 Locus 7: 2534917-2535342 bp 8 Locus 8: 2697872-2706206 bp 9 Locus 9: 2779488-2779581 bp Zoom in on locus 1 x4 Zoom in on locus 2 x8 Zoom in on locus 3 x10 Zoom in on locus 4 x2 x6 x14 x2 Zoom in on locus 5 x16 Zoom in on locus 6 x3 Zoom in on locus 7 x7 Zoom in on locus 8 Zoom in on locus 9 x2 CRISPR array Location: 1305800-1306025 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 1305800-1306025 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 1514047-1514539 bp Num of repeats: 8 Spacers: s4-s10 CRISPR array Location: 1514047-1514539 bp Num of repeats: 8 Spacers: s4-s10 CRISPR array Location: 1624867-1625491 bp Num of repeats: 10 Spacers: s11-s19 CRISPR array Location: 1624867-1625491 bp Num of repeats: 10 Spacers: s11-s19 CRISPR array Location: 1717104-1717197 bp Num of repeats: 2 Spacers: s20-s20 CRISPR array Location: 1717104-1717197 bp Num of repeats: 2 Spacers: s20-s20 CRISPR array Location: 1717258-1717616 bp Num of repeats: 6 Spacers: s21-s25 CRISPR array Location: 1717258-1717616 bp Num of repeats: 6 Spacers: s21-s25 CRISPR array Location: 1718218-1719105 bp Num of repeats: 14 Spacers: s26-s38 CRISPR array Location: 1718218-1719105 bp Num of repeats: 14 Spacers: s26-s38 CRISPR array Location: 1720886-1720981 bp Num of repeats: 2 Spacers: s39-s39 CRISPR array Location: 1720886-1720981 bp Num of repeats: 2 Spacers: s39-s39 CRISPR array Location: 1855384-1856403 bp Num of repeats: 16 Spacers: s40-s54 CRISPR array Location: 1855384-1856403 bp Num of repeats: 16 Spacers: s40-s54 CRISPR array Location: 2174219-2174380 bp Num of repeats: 3 Spacers: s55-s56 CRISPR array Location: 2174219-2174380 bp Num of repeats: 3 Spacers: s55-s56 CRISPR array Location: 2534917-2535342 bp Num of repeats: 7 Spacers: s57-s62 CRISPR array Location: 2534917-2535342 bp Num of repeats: 7 Spacers: s57-s62 Gene: cd09641:cas3HD Type: Type-I Location: 2697872-2700280 bp Gene: cd09693:cas5 Type: Type-I Location: 2700307-2701104 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2701120-2702133 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 2702153-2703619 bp Gene: pfam01881:cas6 Type: other Location: 2703624-2704361 bp Gene: unk Type: unknown Location: 2704462-2704638 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 2705097-2706206 bp CRISPR array Location: 2779488-2779581 bp Num of repeats: 2 Spacers: s63-s63 CRISPR array Location: 2779488-2779581 bp Num of repeats: 2 Spacers: s63-s63 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1305800-1306025 bp]: array | spacers
           [Locus range 1514047-1514539 bp]: array | spacers
           [Locus range 1624867-1625491 bp]: array | spacers
           [Locus range 1717104-1717197 bp]: array | spacers
           [Locus range 1717258-1717616 bp]: array | spacers
           [Locus range 1718218-1719105 bp]: array | spacers
           [Locus range 1720886-1720981 bp]: array | spacers
           [Locus range 1855384-1856403 bp]: array | spacers
           [Locus range 2174219-2174380 bp]: array | spacers
           [Locus range 2534917-2535342 bp]: array | spacers
           [Locus range 2779488-2779581 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)