CRISPRone

CRISPRone report for GCA_006380875.1_ASM638087v1

♦ Seq 1: PZRB01000002.1 Clostridioides difficile strain 20916 u00000crpx_c_020916, whole genome shotgun sequence

⇒Summary: seq-len = 4178792 bp; # of CRISPR array = 11; # of cas gene = 15  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1212849-1217473 bp 2 Locus 2: 1570319-1570748 bp 3 Locus 3: 1679710-1680467 bp 4 Locus 4: 1857207-1858030 bp 5 Locus 5: 2198696-2198856 bp 6 Locus 6: 2579999-2580615 bp 7 Locus 7: 2743887-2752208 bp 8 Locus 8: 2825491-2825848 bp 9 Locus 9: 3328110-3339180 bp 10 Locus 10: 3561601-3561694 bp Zoom in on locus 1 x6 x4 x8 Zoom in on locus 2 x7 Zoom in on locus 3 x12 Zoom in on locus 4 x13 Zoom in on locus 5 x3 Zoom in on locus 6 x10 Zoom in on locus 7 Zoom in on locus 8 x6 Zoom in on locus 9 x24 Zoom in on locus 10 x2 CRISPR array Location: 1212849-1213207 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 1212849-1213207 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 1214890-1215116 bp Num of repeats: 4 Spacers: s6-s8 CRISPR array Location: 1214890-1215116 bp Num of repeats: 4 Spacers: s6-s8 CRISPR array Location: 1216978-1217473 bp Num of repeats: 8 Spacers: s9-s15 CRISPR array Location: 1216978-1217473 bp Num of repeats: 8 Spacers: s9-s15 CRISPR array Location: 1570319-1570748 bp Num of repeats: 7 Spacers: s16-s21 CRISPR array Location: 1570319-1570748 bp Num of repeats: 7 Spacers: s16-s21 CRISPR array Location: 1679710-1680467 bp Num of repeats: 12 Spacers: s22-s32 CRISPR array Location: 1679710-1680467 bp Num of repeats: 12 Spacers: s22-s32 CRISPR array Location: 1857207-1858030 bp Num of repeats: 13 Spacers: s33-s44 CRISPR array Location: 1857207-1858030 bp Num of repeats: 13 Spacers: s33-s44 CRISPR array Location: 2198696-2198856 bp Num of repeats: 3 Spacers: s45-s46 CRISPR array Location: 2198696-2198856 bp Num of repeats: 3 Spacers: s45-s46 CRISPR array Location: 2579999-2580615 bp Num of repeats: 10 Spacers: s47-s55 CRISPR array Location: 2579999-2580615 bp Num of repeats: 10 Spacers: s47-s55 Gene: cd09641:cas3HD Type: Type-I Location: 2743887-2746295 bp Gene: cd09693:cas5 Type: Type-I Location: 2746322-2747119 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2747135-2748151 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 2748171-2749646 bp Gene: pfam01881:cas6 Type: other Location: 2749651-2750388 bp Gene: unk Type: unknown Location: 2750489-2750665 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 2751099-2752208 bp CRISPR array Location: 2825491-2825848 bp Num of repeats: 6 Spacers: s56-s60 CRISPR array Location: 2825491-2825848 bp Num of repeats: 6 Spacers: s56-s60 CRISPR array Location: 3328110-3329642 bp Num of repeats: 24 Spacers: s61-s83 CRISPR array Location: 3328110-3329642 bp Num of repeats: 24 Spacers: s61-s83 Gene: cd09725:cas2 Type: universal Location: 3329826-3330092 bp Gene: cd09722:cas1 Type: universal Location: 3330095-3331075 bp Gene: pfam01930:cas4 Type: Type-I Location: 3331078-3331596 bp Gene: COG1203:cas3 Type: Type-I Location: 3331644-3333965 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 3333976-3334677 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 3334679-3335593 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 3335595-3337445 bp Gene: pfam01881:cas6 Type: other Location: 3337451-3338245 bp Gene: pfam13280:WYL Type: other Location: 3338266-3339180 bp CRISPR array Location: 3561601-3561694 bp Num of repeats: 2 Spacers: s84-s84 CRISPR array Location: 3561601-3561694 bp Num of repeats: 2 Spacers: s84-s84 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1212849-1213207 bp]: array | spacers
           [Locus range 1214890-1215116 bp]: array | spacers
           [Locus range 1216978-1217473 bp]: array | spacers
           [Locus range 1570319-1570748 bp]: array | spacers
           [Locus range 1679710-1680467 bp]: array | spacers
           [Locus range 1857207-1858030 bp]: array | spacers
           [Locus range 2198696-2198856 bp]: array | spacers
           [Locus range 2579999-2580615 bp]: array | spacers
           [Locus range 2825491-2825848 bp]: array | spacers
           [Locus range 3328110-3329642 bp]: array | spacers
           [Locus range 3561601-3561694 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)