CRISPRone

CRISPRone report for GCA_006380895.1_ASM638089v1

♦ Seq 1: PZRA01000008.1 Clostridioides difficile strain 20705 u00001xxpx_o_020705, whole genome shotgun sequence

⇒Summary: seq-len = 1434792 bp; # of CRISPR array = 2; # of cas gene = 21  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 299098-305631 bp 2 Locus 2: 541479-551788 bp 3 Locus 3: 1128113-1135987 bp Zoom in on locus 1 x10 Zoom in on locus 2 x25 Zoom in on locus 3 Gene: cd09693:cas5 Type: Type-I Location: 299098-299745 bp Gene: pfam01881:cas6 Type: other Location: 299736-300500 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 300502-301668 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 301689-302759 bp Gene: COG1203:cas3 Type: Type-I Location: 302770-304755 bp CRISPR array Location: 305008-305631 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 305008-305631 bp Num of repeats: 10 Spacers: s1-s9 Gene: pfam13280:WYL Type: other Location: 541479-542366 bp Gene: pfam01881:cas6 Type: other Location: 542444-543181 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 543187-545064 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 545066-545980 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 545982-546683 bp Gene: COG1203:cas3 Type: Type-I Location: 546694-549015 bp Gene: pfam01930:cas4 Type: Type-I Location: 549030-549581 bp Gene: cd09722:cas1 Type: universal Location: 549584-550564 bp Gene: cd09725:cas2 Type: universal Location: 550567-550833 bp CRISPR array Location: 551017-552635 bp Num of repeats: 25 Spacers: s10-s33 CRISPR array Location: 551017-552635 bp Num of repeats: 25 Spacers: s10-s33 Gene: unk Type: unknown Location: 551166-551333 bp Gene: cls000290:cas8a3 Type: Subtype-I-A Location: 551555-551788 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 1128113-1129222 bp Gene: pfam01881:cas6 Type: other Location: 1129481-1130218 bp Gene: unk Type: unknown Location: 1130223-1130501 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 1130654-1131697 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 1131717-1132730 bp Gene: cd09693:cas5 Type: Type-I Location: 1132746-1133552 bp Gene: cd09641:cas3HD Type: Type-I Location: 1133579-1135987 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 305008-305631 bp]: array | spacers
           [Locus range 551017-552635 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: PZRA01000009.1 Clostridioides difficile strain 20705 u00000xxpx_o_020705, whole genome shotgun sequence

⇒Summary: seq-len = 1973955 bp; # of CRISPR array = 8; # of cas gene = 3  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 161322-161948 bp 2 Locus 2: 203568-203663 bp 3 Locus 3: 511438-512261 bp 4 Locus 4: 649555-652065 bp 5 Locus 5: 744451-744744 bp 6 Locus 6: 775468-779481 bp 7 Locus 7: 855430-856116 bp 8 Locus 8: 1064506-1065463 bp Zoom in on locus 1 x10 Zoom in on locus 2 x2 Zoom in on locus 3 x13 Zoom in on locus 4 x5 x6 Zoom in on locus 5 x5 Zoom in on locus 6 Zoom in on locus 7 x11 Zoom in on locus 8 x15 CRISPR array Location: 161322-161948 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 161322-161948 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 203568-203663 bp Num of repeats: 2 Spacers: s10-s10 CRISPR array Location: 203568-203663 bp Num of repeats: 2 Spacers: s10-s10 CRISPR array Location: 511438-512261 bp Num of repeats: 13 Spacers: s11-s22 CRISPR array Location: 511438-512261 bp Num of repeats: 13 Spacers: s11-s22 CRISPR array Location: 649555-649844 bp Num of repeats: 5 Spacers: s23-s26 CRISPR array Location: 649555-649844 bp Num of repeats: 5 Spacers: s23-s26 CRISPR array Location: 651709-652065 bp Num of repeats: 6 Spacers: s27-s31 CRISPR array Location: 651709-652065 bp Num of repeats: 6 Spacers: s27-s31 CRISPR array Location: 744451-744744 bp Num of repeats: 5 Spacers: s32-s35 CRISPR array Location: 744451-744744 bp Num of repeats: 5 Spacers: s32-s35 Gene: cas14:cas14 Type: Type-V Location: 775468-776586 bp Gene: COG2378:WYL Type: other Location: 777225-778136 bp Gene: unk Type: unknown Location: 778247-778714 bp Gene: mkCas0136:csm2gr11 Type: Subtype-III-A Location: 778882-779481 bp CRISPR array Location: 855430-856116 bp Num of repeats: 11 Spacers: s36-s45 CRISPR array Location: 855430-856116 bp Num of repeats: 11 Spacers: s36-s45 CRISPR array Location: 1064506-1065463 bp Num of repeats: 15 Spacers: s46-s59 CRISPR array Location: 1064506-1065463 bp Num of repeats: 15 Spacers: s46-s59 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 161322-161948 bp]: array | spacers
           [Locus range 203568-203663 bp]: array | spacers
           [Locus range 511438-512261 bp]: array | spacers
           [Locus range 649555-649844 bp]: array | spacers
           [Locus range 651709-652065 bp]: array | spacers
           [Locus range 744451-744744 bp]: array | spacers
           [Locus range 855430-856116 bp]: array | spacers
           [Locus range 1064506-1065463 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)