CRISPRone

CRISPRone report for GCA_006380905.1_ASM638090v1

♦ Seq 1: PZRD01000002.1 Clostridioides difficile strain 20478 u00000crpx_c_020478, whole genome shotgun sequence

⇒Summary: seq-len = 4080472 bp; # of CRISPR array = 9; # of cas gene = 15  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1312347-1313297 bp 2 Locus 2: 1524266-1525545 bp 3 Locus 3: 1635891-1636907 bp 4 Locus 4: 1718266-1718558 bp 5 Locus 5: 1855511-1856789 bp 6 Locus 6: 2174081-2174373 bp 7 Locus 7: 2536819-2537240 bp 8 Locus 8: 2702771-2710636 bp 9 Locus 9: 2785798-2786292 bp 10 Locus 10: 3282675-3293924 bp Zoom in on locus 1 x15 Zoom in on locus 2 x20 Zoom in on locus 3 x16 Zoom in on locus 4 x5 Zoom in on locus 5 x20 Zoom in on locus 6 x5 Zoom in on locus 7 x7 Zoom in on locus 8 Zoom in on locus 9 x8 Zoom in on locus 10 x26 CRISPR array Location: 1312347-1313297 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 1312347-1313297 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 1524266-1525545 bp Num of repeats: 20 Spacers: s15-s33 CRISPR array Location: 1524266-1525545 bp Num of repeats: 20 Spacers: s15-s33 CRISPR array Location: 1635891-1636907 bp Num of repeats: 16 Spacers: s34-s48 CRISPR array Location: 1635891-1636907 bp Num of repeats: 16 Spacers: s34-s48 CRISPR array Location: 1718266-1718558 bp Num of repeats: 5 Spacers: s49-s52 CRISPR array Location: 1718266-1718558 bp Num of repeats: 5 Spacers: s49-s52 CRISPR array Location: 1855511-1856789 bp Num of repeats: 20 Spacers: s53-s71 CRISPR array Location: 1855511-1856789 bp Num of repeats: 20 Spacers: s53-s71 CRISPR array Location: 2174081-2174373 bp Num of repeats: 5 Spacers: s72-s75 CRISPR array Location: 2174081-2174373 bp Num of repeats: 5 Spacers: s72-s75 CRISPR array Location: 2536819-2537240 bp Num of repeats: 7 Spacers: s76-s81 CRISPR array Location: 2536819-2537240 bp Num of repeats: 7 Spacers: s76-s81 Gene: cd09641:cas3HD Type: Type-I Location: 2702771-2705179 bp Gene: cd09693:cas5 Type: Type-I Location: 2705206-2706003 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2706019-2707032 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 2707052-2708527 bp Gene: pfam01881:cas6 Type: other Location: 2708532-2709269 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 2709527-2710636 bp CRISPR array Location: 2785798-2786292 bp Num of repeats: 8 Spacers: s82-s88 CRISPR array Location: 2785798-2786292 bp Num of repeats: 8 Spacers: s82-s88 CRISPR array Location: 3282675-3284329 bp Num of repeats: 26 Spacers: s89-s113 CRISPR array Location: 3282675-3284329 bp Num of repeats: 26 Spacers: s89-s113 Gene: cd09725:cas2 Type: universal Location: 3284513-3284779 bp Gene: cd09722:cas1 Type: universal Location: 3284782-3285762 bp Gene: pfam01930:cas4 Type: Type-I Location: 3285765-3286283 bp Gene: cd09641:cas3HD Type: Type-I Location: 3286331-3288652 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 3288663-3289364 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 3289366-3290280 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 3290282-3292132 bp Gene: pfam01881:cas6 Type: other Location: 3292138-3292875 bp Gene: pfam13280:WYL Type: other Location: 3292953-3293924 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1312347-1313297 bp]: array | spacers
           [Locus range 1524266-1525545 bp]: array | spacers
           [Locus range 1635891-1636907 bp]: array | spacers
           [Locus range 1718266-1718558 bp]: array | spacers
           [Locus range 1855511-1856789 bp]: array | spacers
           [Locus range 2174081-2174373 bp]: array | spacers
           [Locus range 2536819-2537240 bp]: array | spacers
           [Locus range 2785798-2786292 bp]: array | spacers
           [Locus range 3282675-3284329 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)