CRISPRone

CRISPRone report for GCA_006380915.1_ASM638091v1

♦ Seq 1: PZRC01000002.1 Clostridioides difficile strain 20485 u00000xxpx_o_020485, whole genome shotgun sequence

⇒Summary: seq-len = 4083672 bp; # of CRISPR array = 9; # of cas gene = 15  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 821601-832767 bp 2 Locus 2: 1329111-1329606 bp 3 Locus 3: 1404759-1412624 bp 4 Locus 4: 1578144-1578566 bp 5 Locus 5: 1940975-1941268 bp 6 Locus 6: 2258533-2259810 bp 7 Locus 7: 2396566-2396857 bp 8 Locus 8: 2478211-2479226 bp 9 Locus 9: 2589555-2590833 bp 10 Locus 10: 2801793-2802742 bp Zoom in on locus 1 x26 Zoom in on locus 2 x8 Zoom in on locus 3 Zoom in on locus 4 x7 Zoom in on locus 5 x5 Zoom in on locus 6 x20 Zoom in on locus 7 x5 Zoom in on locus 8 x16 Zoom in on locus 9 x20 Zoom in on locus 10 x15 Gene: pfam13280:WYL Type: other Location: 821601-822488 bp Gene: pfam01881:cas6 Type: other Location: 822566-823303 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 823309-825159 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 825161-826075 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 826077-826778 bp Gene: cd09641:cas3HD Type: Type-I Location: 826789-829110 bp Gene: pfam01930:cas4 Type: Type-I Location: 829125-829676 bp Gene: cd09722:cas1 Type: universal Location: 829679-830659 bp Gene: cd09725:cas2 Type: universal Location: 830662-830928 bp CRISPR array Location: 831112-832767 bp Num of repeats: 26 Spacers: s1-s25 CRISPR array Location: 831112-832767 bp Num of repeats: 26 Spacers: s1-s25 CRISPR array Location: 1329111-1329606 bp Num of repeats: 8 Spacers: s26-s32 CRISPR array Location: 1329111-1329606 bp Num of repeats: 8 Spacers: s26-s32 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 1404759-1405868 bp Gene: pfam01881:cas6 Type: other Location: 1406126-1406863 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 1406868-1408343 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 1408363-1409376 bp Gene: cd09693:cas5 Type: Type-I Location: 1409392-1410189 bp Gene: cd09641:cas3HD Type: Type-I Location: 1410216-1412624 bp CRISPR array Location: 1578144-1578566 bp Num of repeats: 7 Spacers: s33-s38 CRISPR array Location: 1578144-1578566 bp Num of repeats: 7 Spacers: s33-s38 CRISPR array Location: 1940975-1941268 bp Num of repeats: 5 Spacers: s39-s42 CRISPR array Location: 1940975-1941268 bp Num of repeats: 5 Spacers: s39-s42 CRISPR array Location: 2258533-2259810 bp Num of repeats: 20 Spacers: s43-s61 CRISPR array Location: 2258533-2259810 bp Num of repeats: 20 Spacers: s43-s61 CRISPR array Location: 2396566-2396857 bp Num of repeats: 5 Spacers: s62-s65 CRISPR array Location: 2396566-2396857 bp Num of repeats: 5 Spacers: s62-s65 CRISPR array Location: 2478211-2479226 bp Num of repeats: 16 Spacers: s66-s80 CRISPR array Location: 2478211-2479226 bp Num of repeats: 16 Spacers: s66-s80 CRISPR array Location: 2589555-2590833 bp Num of repeats: 20 Spacers: s81-s99 CRISPR array Location: 2589555-2590833 bp Num of repeats: 20 Spacers: s81-s99 CRISPR array Location: 2801793-2802742 bp Num of repeats: 15 Spacers: s100-s113 CRISPR array Location: 2801793-2802742 bp Num of repeats: 15 Spacers: s100-s113 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 831112-832767 bp]: array | spacers
           [Locus range 1329111-1329606 bp]: array | spacers
           [Locus range 1578144-1578566 bp]: array | spacers
           [Locus range 1940975-1941268 bp]: array | spacers
           [Locus range 2258533-2259810 bp]: array | spacers
           [Locus range 2396566-2396857 bp]: array | spacers
           [Locus range 2478211-2479226 bp]: array | spacers
           [Locus range 2589555-2590833 bp]: array | spacers
           [Locus range 2801793-2802742 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)