CRISPRone

CRISPRone report for GCA_006380955.1_ASM638095v1

♦ Seq 1: PZRE01000002.1 Clostridioides difficile strain 20483 u00000crpx_c_020483, whole genome shotgun sequence

⇒Summary: seq-len = 4302423 bp; # of CRISPR array = 11; # of cas gene = 15  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1297527-1297690 bp 2 Locus 2: 1510870-1511294 bp 3 Locus 3: 1621614-1622237 bp 4 Locus 4: 1721616-1721777 bp 5 Locus 5: 1860071-1861483 bp 6 Locus 6: 2172284-2172512 bp 7 Locus 7: 2265158-2266762 bp 8 Locus 8: 2572130-2573015 bp 9 Locus 9: 2738051-2745907 bp 10 Locus 10: 2819189-2819350 bp 11 Locus 11: 3344849-3355028 bp 12 Locus 12: 3638923-3639016 bp Zoom in on locus 1 x3 Zoom in on locus 2 x7 Zoom in on locus 3 x10 Zoom in on locus 4 x3 Zoom in on locus 5 x22 Zoom in on locus 6 x4 Zoom in on locus 7 x25 Zoom in on locus 8 x14 Zoom in on locus 9 Zoom in on locus 10 x3 Zoom in on locus 11 x10 Zoom in on locus 12 x2 CRISPR array Location: 1297527-1297690 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 1297527-1297690 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 1510870-1511294 bp Num of repeats: 7 Spacers: s3-s8 CRISPR array Location: 1510870-1511294 bp Num of repeats: 7 Spacers: s3-s8 CRISPR array Location: 1621614-1622237 bp Num of repeats: 10 Spacers: s9-s17 CRISPR array Location: 1621614-1622237 bp Num of repeats: 10 Spacers: s9-s17 CRISPR array Location: 1721616-1721777 bp Num of repeats: 3 Spacers: s18-s19 CRISPR array Location: 1721616-1721777 bp Num of repeats: 3 Spacers: s18-s19 CRISPR array Location: 1860071-1861483 bp Num of repeats: 22 Spacers: s20-s40 CRISPR array Location: 1860071-1861483 bp Num of repeats: 22 Spacers: s20-s40 CRISPR array Location: 2172284-2172512 bp Num of repeats: 4 Spacers: s41-s43 CRISPR array Location: 2172284-2172512 bp Num of repeats: 4 Spacers: s41-s43 CRISPR array Location: 2265158-2266762 bp Num of repeats: 25 Spacers: s44-s67 CRISPR array Location: 2265158-2266762 bp Num of repeats: 25 Spacers: s44-s67 CRISPR array Location: 2572130-2573015 bp Num of repeats: 14 Spacers: s68-s80 CRISPR array Location: 2572130-2573015 bp Num of repeats: 14 Spacers: s68-s80 Gene: cd09641:cas3HD Type: Type-I Location: 2738051-2740459 bp Gene: cd09693:cas5 Type: Type-I Location: 2740486-2741283 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2741299-2742312 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 2742332-2743798 bp Gene: pfam01881:cas6 Type: other Location: 2743803-2744540 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 2744798-2745907 bp CRISPR array Location: 2819189-2819350 bp Num of repeats: 3 Spacers: s81-s82 CRISPR array Location: 2819189-2819350 bp Num of repeats: 3 Spacers: s81-s82 CRISPR array Location: 3344849-3345463 bp Num of repeats: 10 Spacers: s83-s91 CRISPR array Location: 3344849-3345463 bp Num of repeats: 10 Spacers: s83-s91 Gene: cd09725:cas2 Type: universal Location: 3345647-3345913 bp Gene: cd09722:cas1 Type: universal Location: 3345916-3346896 bp Gene: pfam01930:cas4 Type: Type-I Location: 3346899-3347417 bp Gene: COG1203:cas3 Type: Type-I Location: 3347465-3349786 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 3349797-3350498 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 3350500-3351414 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 3351416-3353293 bp Gene: pfam01881:cas6 Type: other Location: 3353299-3354036 bp Gene: pfam13280:WYL Type: other Location: 3354114-3355028 bp CRISPR array Location: 3638923-3639016 bp Num of repeats: 2 Spacers: s92-s92 CRISPR array Location: 3638923-3639016 bp Num of repeats: 2 Spacers: s92-s92 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1297527-1297690 bp]: array | spacers
           [Locus range 1510870-1511294 bp]: array | spacers
           [Locus range 1621614-1622237 bp]: array | spacers
           [Locus range 1721616-1721777 bp]: array | spacers
           [Locus range 1860071-1861483 bp]: array | spacers
           [Locus range 2172284-2172512 bp]: array | spacers
           [Locus range 2265158-2266762 bp]: array | spacers
           [Locus range 2572130-2573015 bp]: array | spacers
           [Locus range 2819189-2819350 bp]: array | spacers
           [Locus range 3344849-3345463 bp]: array | spacers
           [Locus range 3638923-3639016 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)