CRISPRone

CRISPRone report for GCA_006380975.1_ASM638097v1

♦ Seq 1: PZRF01000003.1 Clostridioides difficile strain 21022 u00000crpx_c_021022, whole genome shotgun sequence

⇒Summary: seq-len = 4180979 bp; # of CRISPR array = 12; # of cas gene = 15  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1327987-1329136 bp 2 Locus 2: 1540814-1541307 bp 3 Locus 3: 1651628-1652119 bp 4 Locus 4: 1742848-1747516 bp 5 Locus 5: 1885364-1886514 bp 6 Locus 6: 2227172-2227332 bp 7 Locus 7: 2608563-2609179 bp 8 Locus 8: 2772451-2780772 bp 9 Locus 9: 2854055-2854412 bp 10 Locus 10: 3356281-3367418 bp 11 Locus 11: 3589824-3589917 bp Zoom in on locus 1 x18 Zoom in on locus 2 x8 Zoom in on locus 3 x8 Zoom in on locus 4 x7 x4 x10 Zoom in on locus 5 x18 Zoom in on locus 6 x3 Zoom in on locus 7 x10 Zoom in on locus 8 Zoom in on locus 9 x6 Zoom in on locus 10 x25 Zoom in on locus 11 x2 CRISPR array Location: 1327987-1329136 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 1327987-1329136 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 1540814-1541307 bp Num of repeats: 8 Spacers: s18-s24 CRISPR array Location: 1540814-1541307 bp Num of repeats: 8 Spacers: s18-s24 CRISPR array Location: 1651628-1652119 bp Num of repeats: 8 Spacers: s25-s31 CRISPR array Location: 1651628-1652119 bp Num of repeats: 8 Spacers: s25-s31 CRISPR array Location: 1742848-1743272 bp Num of repeats: 7 Spacers: s32-s37 CRISPR array Location: 1742848-1743272 bp Num of repeats: 7 Spacers: s32-s37 CRISPR array Location: 1744876-1745100 bp Num of repeats: 4 Spacers: s38-s40 CRISPR array Location: 1744876-1745100 bp Num of repeats: 4 Spacers: s38-s40 CRISPR array Location: 1746893-1747516 bp Num of repeats: 10 Spacers: s41-s49 CRISPR array Location: 1746893-1747516 bp Num of repeats: 10 Spacers: s41-s49 CRISPR array Location: 1885364-1886514 bp Num of repeats: 18 Spacers: s50-s66 CRISPR array Location: 1885364-1886514 bp Num of repeats: 18 Spacers: s50-s66 CRISPR array Location: 2227172-2227332 bp Num of repeats: 3 Spacers: s67-s68 CRISPR array Location: 2227172-2227332 bp Num of repeats: 3 Spacers: s67-s68 CRISPR array Location: 2608563-2609179 bp Num of repeats: 10 Spacers: s69-s77 CRISPR array Location: 2608563-2609179 bp Num of repeats: 10 Spacers: s69-s77 Gene: cd09641:cas3HD Type: Type-I Location: 2772451-2774859 bp Gene: cd09693:cas5 Type: Type-I Location: 2774886-2775683 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2775699-2776715 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 2776735-2778210 bp Gene: pfam01881:cas6 Type: other Location: 2778215-2778952 bp Gene: unk Type: unknown Location: 2779053-2779229 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 2779663-2780772 bp CRISPR array Location: 2854055-2854412 bp Num of repeats: 6 Spacers: s78-s82 CRISPR array Location: 2854055-2854412 bp Num of repeats: 6 Spacers: s78-s82 CRISPR array Location: 3356281-3357880 bp Num of repeats: 25 Spacers: s83-s106 CRISPR array Location: 3356281-3357880 bp Num of repeats: 25 Spacers: s83-s106 Gene: cd09725:cas2 Type: universal Location: 3358064-3358330 bp Gene: cd09722:cas1 Type: universal Location: 3358333-3359313 bp Gene: pfam01930:cas4 Type: Type-I Location: 3359316-3359834 bp Gene: COG1203:cas3 Type: Type-I Location: 3359882-3362203 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 3362214-3362915 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 3362917-3363831 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 3363833-3365683 bp Gene: pfam01881:cas6 Type: other Location: 3365689-3366483 bp Gene: pfam13280:WYL Type: other Location: 3366504-3367418 bp CRISPR array Location: 3589824-3589917 bp Num of repeats: 2 Spacers: s107-s107 CRISPR array Location: 3589824-3589917 bp Num of repeats: 2 Spacers: s107-s107 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1327987-1329136 bp]: array | spacers
           [Locus range 1540814-1541307 bp]: array | spacers
           [Locus range 1651628-1652119 bp]: array | spacers
           [Locus range 1742848-1743272 bp]: array | spacers
           [Locus range 1744876-1745100 bp]: array | spacers
           [Locus range 1746893-1747516 bp]: array | spacers
           [Locus range 1885364-1886514 bp]: array | spacers
           [Locus range 2227172-2227332 bp]: array | spacers
           [Locus range 2608563-2609179 bp]: array | spacers
           [Locus range 2854055-2854412 bp]: array | spacers
           [Locus range 3356281-3357880 bp]: array | spacers
           [Locus range 3589824-3589917 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)