CRISPRone

CRISPRone report for GCA_006380995.1_ASM638099v1

♦ Seq 1: PZRG01000004.1 Clostridioides difficile strain 20479 u00000crpx_c_020479, whole genome shotgun sequence

⇒Summary: seq-len = 4038225 bp; # of CRISPR array = 7; # of cas gene = 15  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1448338-1449756 bp 2 Locus 2: 1560066-1560755 bp 3 Locus 3: 1640985-1641079 bp 4 Locus 4: 1794987-1797324 bp 5 Locus 5: 2114651-2114940 bp 6 Locus 6: 2465902-2467506 bp 7 Locus 7: 2633378-2641243 bp 8 Locus 8: 3205514-3216605 bp Zoom in on locus 1 x22 Zoom in on locus 2 x11 Zoom in on locus 3 x2 Zoom in on locus 4 x36 Zoom in on locus 5 x5 Zoom in on locus 6 x25 Zoom in on locus 7 Zoom in on locus 8 x24 CRISPR array Location: 1448338-1449756 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 1448338-1449756 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 1560066-1560755 bp Num of repeats: 11 Spacers: s22-s31 CRISPR array Location: 1560066-1560755 bp Num of repeats: 11 Spacers: s22-s31 CRISPR array Location: 1640985-1641079 bp Num of repeats: 2 Spacers: s32-s32 CRISPR array Location: 1640985-1641079 bp Num of repeats: 2 Spacers: s32-s32 CRISPR array Location: 1794987-1797324 bp Num of repeats: 36 Spacers: s33-s67 CRISPR array Location: 1794987-1797324 bp Num of repeats: 36 Spacers: s33-s67 CRISPR array Location: 2114651-2114940 bp Num of repeats: 5 Spacers: s68-s71 CRISPR array Location: 2114651-2114940 bp Num of repeats: 5 Spacers: s68-s71 CRISPR array Location: 2465902-2467506 bp Num of repeats: 25 Spacers: s72-s95 CRISPR array Location: 2465902-2467506 bp Num of repeats: 25 Spacers: s72-s95 Gene: cd09641:cas3HD Type: Type-I Location: 2633378-2635786 bp Gene: cd09693:cas5 Type: Type-I Location: 2635813-2636610 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2636626-2637639 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 2637659-2639134 bp Gene: pfam01881:cas6 Type: other Location: 2639139-2639876 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 2640134-2641243 bp CRISPR array Location: 3205514-3207067 bp Num of repeats: 24 Spacers: s96-s118 CRISPR array Location: 3205514-3207067 bp Num of repeats: 24 Spacers: s96-s118 Gene: cd09725:cas2 Type: universal Location: 3207251-3207517 bp Gene: cd09722:cas1 Type: universal Location: 3207520-3208500 bp Gene: pfam01930:cas4 Type: Type-I Location: 3208503-3209021 bp Gene: COG1203:cas3 Type: Type-I Location: 3209069-3211390 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 3211401-3212102 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 3212104-3213018 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 3213020-3214870 bp Gene: pfam01881:cas6 Type: other Location: 3214876-3215670 bp Gene: pfam13280:WYL Type: other Location: 3215691-3216605 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1448338-1449756 bp]: array | spacers
           [Locus range 1560066-1560755 bp]: array | spacers
           [Locus range 1640985-1641079 bp]: array | spacers
           [Locus range 1794987-1797324 bp]: array | spacers
           [Locus range 2114651-2114940 bp]: array | spacers
           [Locus range 2465902-2467506 bp]: array | spacers
           [Locus range 3205514-3207067 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)