CRISPRone

CRISPRone report for GCA_006381005.1_ASM638100v1

♦ Seq 1: PZRI01000001.1 Clostridioides difficile strain 20707 u00000xxpx_o_020707, whole genome shotgun sequence

⇒Summary: seq-len = 4277080 bp; # of CRISPR array = 14; # of cas gene = 15  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 751731-751825 bp 2 Locus 2: 973839-985015 bp 3 Locus 3: 1526008-1526366 bp 4 Locus 4: 1599649-1607970 bp 5 Locus 5: 1771242-1771859 bp 6 Locus 6: 2153014-2153175 bp 7 Locus 7: 2493826-2494975 bp 8 Locus 8: 2632795-2637396 bp 9 Locus 9: 2728126-2728816 bp 10 Locus 10: 2839108-2839666 bp 11 Locus 11: 3192536-3197093 bp Zoom in on locus 1 x2 Zoom in on locus 2 x26 Zoom in on locus 3 x6 Zoom in on locus 4 Zoom in on locus 5 x10 Zoom in on locus 6 x3 Zoom in on locus 7 x18 Zoom in on locus 8 x13 x4 x3 Zoom in on locus 9 x11 Zoom in on locus 10 x9 Zoom in on locus 11 x8 x4 x5 CRISPR array Location: 751731-751825 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 751731-751825 bp Num of repeats: 2 Spacers: s1-s1 Gene: pfam13280:WYL Type: other Location: 973839-974726 bp Gene: pfam01881:cas6 Type: other Location: 974804-975541 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 975547-977397 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 977399-978313 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 978315-979016 bp Gene: COG1203:cas3 Type: Type-I Location: 979027-981348 bp Gene: pfam01930:cas4 Type: Type-I Location: 981363-981914 bp Gene: cd09722:cas1 Type: universal Location: 981917-982897 bp Gene: cd09725:cas2 Type: universal Location: 982900-983166 bp CRISPR array Location: 983350-985015 bp Num of repeats: 26 Spacers: s2-s26 CRISPR array Location: 983350-985015 bp Num of repeats: 26 Spacers: s2-s26 CRISPR array Location: 1526008-1526366 bp Num of repeats: 6 Spacers: s27-s31 CRISPR array Location: 1526008-1526366 bp Num of repeats: 6 Spacers: s27-s31 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 1599649-1600758 bp Gene: unk Type: unknown Location: 1601192-1601368 bp Gene: pfam01881:cas6 Type: other Location: 1601469-1602206 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 1602211-1603686 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 1603706-1604722 bp Gene: cd09693:cas5 Type: Type-I Location: 1604738-1605535 bp Gene: cd09641:cas3HD Type: Type-I Location: 1605562-1607970 bp CRISPR array Location: 1771242-1771859 bp Num of repeats: 10 Spacers: s32-s40 CRISPR array Location: 1771242-1771859 bp Num of repeats: 10 Spacers: s32-s40 CRISPR array Location: 2153014-2153175 bp Num of repeats: 3 Spacers: s41-s42 CRISPR array Location: 2153014-2153175 bp Num of repeats: 3 Spacers: s41-s42 CRISPR array Location: 2493826-2494975 bp Num of repeats: 18 Spacers: s43-s59 CRISPR array Location: 2493826-2494975 bp Num of repeats: 18 Spacers: s43-s59 CRISPR array Location: 2632795-2633614 bp Num of repeats: 13 Spacers: s60-s71 CRISPR array Location: 2632795-2633614 bp Num of repeats: 13 Spacers: s60-s71 CRISPR array Location: 2635408-2635631 bp Num of repeats: 4 Spacers: s72-s74 CRISPR array Location: 2635408-2635631 bp Num of repeats: 4 Spacers: s72-s74 CRISPR array Location: 2637236-2637396 bp Num of repeats: 3 Spacers: s75-s76 CRISPR array Location: 2637236-2637396 bp Num of repeats: 3 Spacers: s75-s76 CRISPR array Location: 2728126-2728816 bp Num of repeats: 11 Spacers: s77-s86 CRISPR array Location: 2728126-2728816 bp Num of repeats: 11 Spacers: s77-s86 CRISPR array Location: 2839108-2839666 bp Num of repeats: 9 Spacers: s87-s94 CRISPR array Location: 2839108-2839666 bp Num of repeats: 9 Spacers: s87-s94 CRISPR array Location: 3192536-3193030 bp Num of repeats: 8 Spacers: s95-s101 CRISPR array Location: 3192536-3193030 bp Num of repeats: 8 Spacers: s95-s101 CRISPR array Location: 3194893-3195118 bp Num of repeats: 4 Spacers: s102-s104 CRISPR array Location: 3194893-3195118 bp Num of repeats: 4 Spacers: s102-s104 CRISPR array Location: 3196802-3197093 bp Num of repeats: 5 Spacers: s105-s108 CRISPR array Location: 3196802-3197093 bp Num of repeats: 5 Spacers: s105-s108 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 751731-751825 bp]: array | spacers
           [Locus range 983350-985015 bp]: array | spacers
           [Locus range 1526008-1526366 bp]: array | spacers
           [Locus range 1771242-1771859 bp]: array | spacers
           [Locus range 2153014-2153175 bp]: array | spacers
           [Locus range 2493826-2494975 bp]: array | spacers
           [Locus range 2632795-2633614 bp]: array | spacers
           [Locus range 2635408-2635631 bp]: array | spacers
           [Locus range 2637236-2637396 bp]: array | spacers
           [Locus range 2728126-2728816 bp]: array | spacers
           [Locus range 2839108-2839666 bp]: array | spacers
           [Locus range 3192536-3193030 bp]: array | spacers
           [Locus range 3194893-3195118 bp]: array | spacers
           [Locus range 3196802-3197093 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)