CRISPRone

CRISPRone report for GCA_006381025.1_ASM638102v1

♦ Seq 1: PZRH01000001.1 Clostridioides difficile strain 20481 u00000xxpx_o_020481, whole genome shotgun sequence

⇒Summary: seq-len = 4179677 bp; # of CRISPR array = 10; # of cas gene = 24  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 829425-835958 bp 2 Locus 2: 1071807-1082116 bp 3 Locus 3: 1658514-1666389 bp 4 Locus 4: 2126639-2127265 bp 5 Locus 5: 2168885-2168980 bp 6 Locus 6: 2476756-2477579 bp 7 Locus 7: 2614854-2617364 bp 8 Locus 8: 2709748-2710041 bp 9 Locus 9: 2740765-2744778 bp 10 Locus 10: 2820726-2821412 bp 11 Locus 11: 3029801-3030758 bp Zoom in on locus 1 x10 Zoom in on locus 2 x25 Zoom in on locus 3 Zoom in on locus 4 x10 Zoom in on locus 5 x2 Zoom in on locus 6 x13 Zoom in on locus 7 x5 x6 Zoom in on locus 8 x5 Zoom in on locus 9 Zoom in on locus 10 x11 Zoom in on locus 11 x15 Gene: cd09693:cas5 Type: Type-I Location: 829425-830072 bp Gene: pfam01881:cas6 Type: other Location: 830063-830827 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 830829-831995 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 832016-833086 bp Gene: COG1203:cas3 Type: Type-I Location: 833097-835082 bp CRISPR array Location: 835335-835958 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 835335-835958 bp Num of repeats: 10 Spacers: s1-s9 Gene: pfam13280:WYL Type: other Location: 1071807-1072694 bp Gene: pfam01881:cas6 Type: other Location: 1072772-1073509 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 1073515-1075392 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 1075394-1076308 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 1076310-1077011 bp Gene: COG1203:cas3 Type: Type-I Location: 1077022-1079343 bp Gene: pfam01930:cas4 Type: Type-I Location: 1079358-1079909 bp Gene: cd09722:cas1 Type: universal Location: 1079912-1080892 bp Gene: cd09725:cas2 Type: universal Location: 1080895-1081161 bp CRISPR array Location: 1081345-1082963 bp Num of repeats: 25 Spacers: s10-s33 CRISPR array Location: 1081345-1082963 bp Num of repeats: 25 Spacers: s10-s33 Gene: unk Type: unknown Location: 1081494-1081661 bp Gene: cls000290:cas8a3 Type: Subtype-I-A Location: 1081883-1082116 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 1658514-1659623 bp Gene: pfam01881:cas6 Type: other Location: 1659882-1660619 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 1660624-1662099 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 1662119-1663132 bp Gene: cd09693:cas5 Type: Type-I Location: 1663148-1663954 bp Gene: cd09641:cas3HD Type: Type-I Location: 1663981-1666389 bp CRISPR array Location: 2126639-2127265 bp Num of repeats: 10 Spacers: s34-s42 CRISPR array Location: 2126639-2127265 bp Num of repeats: 10 Spacers: s34-s42 CRISPR array Location: 2168885-2168980 bp Num of repeats: 2 Spacers: s43-s43 CRISPR array Location: 2168885-2168980 bp Num of repeats: 2 Spacers: s43-s43 CRISPR array Location: 2476756-2477579 bp Num of repeats: 13 Spacers: s44-s55 CRISPR array Location: 2476756-2477579 bp Num of repeats: 13 Spacers: s44-s55 CRISPR array Location: 2614854-2615143 bp Num of repeats: 5 Spacers: s56-s59 CRISPR array Location: 2614854-2615143 bp Num of repeats: 5 Spacers: s56-s59 CRISPR array Location: 2617008-2617364 bp Num of repeats: 6 Spacers: s60-s64 CRISPR array Location: 2617008-2617364 bp Num of repeats: 6 Spacers: s60-s64 CRISPR array Location: 2709748-2710041 bp Num of repeats: 5 Spacers: s65-s68 CRISPR array Location: 2709748-2710041 bp Num of repeats: 5 Spacers: s65-s68 Gene: cas14:cas14 Type: Type-V Location: 2740765-2741883 bp Gene: COG2378:WYL Type: other Location: 2742522-2743433 bp Gene: unk Type: unknown Location: 2743544-2744011 bp Gene: mkCas0136:csm2gr11 Type: Subtype-III-A Location: 2744179-2744778 bp CRISPR array Location: 2820726-2821412 bp Num of repeats: 11 Spacers: s69-s78 CRISPR array Location: 2820726-2821412 bp Num of repeats: 11 Spacers: s69-s78 CRISPR array Location: 3029801-3030758 bp Num of repeats: 15 Spacers: s79-s92 CRISPR array Location: 3029801-3030758 bp Num of repeats: 15 Spacers: s79-s92 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 835335-835958 bp]: array | spacers
           [Locus range 1081345-1082963 bp]: array | spacers
           [Locus range 2126639-2127265 bp]: array | spacers
           [Locus range 2168885-2168980 bp]: array | spacers
           [Locus range 2476756-2477579 bp]: array | spacers
           [Locus range 2614854-2615143 bp]: array | spacers
           [Locus range 2617008-2617364 bp]: array | spacers
           [Locus range 2709748-2710041 bp]: array | spacers
           [Locus range 2820726-2821412 bp]: array | spacers
           [Locus range 3029801-3030758 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)