CRISPRone

CRISPRone report for GCA_006381045.1_ASM638104v1

♦ Seq 1: PZRJ01000002.1 Clostridioides difficile strain 20486 u00000crpx_c_020486, whole genome shotgun sequence

⇒Summary: seq-len = 4178286 bp; # of CRISPR array = 11; # of cas gene = 20  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 301072-303258 bp 2 Locus 2: 1391895-1393050 bp 3 Locus 3: 1632937-1634022 bp 4 Locus 4: 1744323-1744684 bp 5 Locus 5: 1824037-1824262 bp 6 Locus 6: 1964292-1966836 bp 7 Locus 7: 2630811-2632362 bp 8 Locus 8: 2797724-2806042 bp 9 Locus 9: 2879322-2880011 bp 10 Locus 10: 3377536-3389560 bp 11 Locus 11: 3588876-3595893 bp Zoom in on locus 1 x2 x5 Zoom in on locus 2 x18 Zoom in on locus 3 x17 Zoom in on locus 4 x6 Zoom in on locus 5 x4 Zoom in on locus 6 x39 Zoom in on locus 7 x24 Zoom in on locus 8 Zoom in on locus 9 x11 Zoom in on locus 10 x38 Zoom in on locus 11 x13 CRISPR array Location: 301072-301166 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 301072-301166 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 302963-303258 bp Num of repeats: 5 Spacers: s2-s5 CRISPR array Location: 302963-303258 bp Num of repeats: 5 Spacers: s2-s5 CRISPR array Location: 1391895-1393050 bp Num of repeats: 18 Spacers: s6-s22 CRISPR array Location: 1391895-1393050 bp Num of repeats: 18 Spacers: s6-s22 CRISPR array Location: 1632937-1634022 bp Num of repeats: 17 Spacers: s23-s38 CRISPR array Location: 1632937-1634022 bp Num of repeats: 17 Spacers: s23-s38 CRISPR array Location: 1744323-1744684 bp Num of repeats: 6 Spacers: s39-s43 CRISPR array Location: 1744323-1744684 bp Num of repeats: 6 Spacers: s39-s43 CRISPR array Location: 1824037-1824262 bp Num of repeats: 4 Spacers: s44-s46 CRISPR array Location: 1824037-1824262 bp Num of repeats: 4 Spacers: s44-s46 CRISPR array Location: 1964292-1966836 bp Num of repeats: 39 Spacers: s47-s84 CRISPR array Location: 1964292-1966836 bp Num of repeats: 39 Spacers: s47-s84 CRISPR array Location: 2630811-2632362 bp Num of repeats: 24 Spacers: s85-s107 CRISPR array Location: 2630811-2632362 bp Num of repeats: 24 Spacers: s85-s107 Gene: cd09641:cas3HD Type: Type-I Location: 2797724-2800132 bp Gene: cd09693:cas5 Type: Type-I Location: 2800159-2800956 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2800972-2801985 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 2802005-2803480 bp Gene: pfam01881:cas6 Type: other Location: 2803485-2804222 bp Gene: unk Type: unknown Location: 2804323-2804499 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 2804933-2806042 bp CRISPR array Location: 2879322-2880011 bp Num of repeats: 11 Spacers: s108-s117 CRISPR array Location: 2879322-2880011 bp Num of repeats: 11 Spacers: s108-s117 CRISPR array Location: 3377536-3379995 bp Num of repeats: 38 Spacers: s118-s154 CRISPR array Location: 3377536-3379995 bp Num of repeats: 38 Spacers: s118-s154 Gene: cd09725:cas2 Type: universal Location: 3380179-3380445 bp Gene: cd09722:cas1 Type: universal Location: 3380448-3381428 bp Gene: pfam01930:cas4 Type: Type-I Location: 3381431-3381949 bp Gene: cd09641:cas3HD Type: Type-I Location: 3381997-3384318 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 3384329-3385030 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 3385032-3385946 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 3385948-3387825 bp Gene: pfam01881:cas6 Type: other Location: 3387831-3388625 bp Gene: pfam13280:WYL Type: other Location: 3388646-3389560 bp CRISPR array Location: 3588876-3589691 bp Num of repeats: 13 Spacers: s155-s166 CRISPR array Location: 3588876-3589691 bp Num of repeats: 13 Spacers: s155-s166 Gene: COG1203:cas3 Type: Type-I Location: 3590257-3592239 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 3592250-3593320 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 3593341-3594489 bp Gene: pfam01881:cas6 Type: other Location: 3594491-3595255 bp Gene: cd09693:cas5 Type: Type-I Location: 3595246-3595893 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 301072-301166 bp]: array | spacers
           [Locus range 302963-303258 bp]: array | spacers
           [Locus range 1391895-1393050 bp]: array | spacers
           [Locus range 1632937-1634022 bp]: array | spacers
           [Locus range 1744323-1744684 bp]: array | spacers
           [Locus range 1824037-1824262 bp]: array | spacers
           [Locus range 1964292-1966836 bp]: array | spacers
           [Locus range 2630811-2632362 bp]: array | spacers
           [Locus range 2879322-2880011 bp]: array | spacers
           [Locus range 3377536-3379995 bp]: array | spacers
           [Locus range 3588876-3589691 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)