CRISPRone

CRISPRone report for GCA_006381075.1_ASM638107v1

♦ Seq 1: PZRK01000001.1 Clostridioides difficile strain 21018 u00000crpx_c_021018, whole genome shotgun sequence

⇒Summary: seq-len = 4235401 bp; # of CRISPR array = 11; # of cas gene = 15  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1327376-1327539 bp 2 Locus 2: 1536320-1536744 bp 3 Locus 3: 1647064-1647687 bp 4 Locus 4: 1822345-1823757 bp 5 Locus 5: 2134538-2134766 bp 6 Locus 6: 2179160-2181344 bp 7 Locus 7: 2235132-2236802 bp 8 Locus 8: 2540386-2540811 bp 9 Locus 9: 2703231-2711096 bp 10 Locus 10: 2784377-2784471 bp 11 Locus 11: 3313701-3323881 bp Zoom in on locus 1 x3 Zoom in on locus 2 x7 Zoom in on locus 3 x10 Zoom in on locus 4 x22 Zoom in on locus 5 x4 Zoom in on locus 6 x3 x4 Zoom in on locus 7 x26 Zoom in on locus 8 x7 Zoom in on locus 9 Zoom in on locus 10 x2 Zoom in on locus 11 x10 CRISPR array Location: 1327376-1327539 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 1327376-1327539 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 1536320-1536744 bp Num of repeats: 7 Spacers: s3-s8 CRISPR array Location: 1536320-1536744 bp Num of repeats: 7 Spacers: s3-s8 CRISPR array Location: 1647064-1647687 bp Num of repeats: 10 Spacers: s9-s17 CRISPR array Location: 1647064-1647687 bp Num of repeats: 10 Spacers: s9-s17 CRISPR array Location: 1822345-1823757 bp Num of repeats: 22 Spacers: s18-s38 CRISPR array Location: 1822345-1823757 bp Num of repeats: 22 Spacers: s18-s38 CRISPR array Location: 2134538-2134766 bp Num of repeats: 4 Spacers: s39-s41 CRISPR array Location: 2134538-2134766 bp Num of repeats: 4 Spacers: s39-s41 CRISPR array Location: 2179160-2179319 bp Num of repeats: 3 Spacers: s42-s43 CRISPR array Location: 2179160-2179319 bp Num of repeats: 3 Spacers: s42-s43 CRISPR array Location: 2181120-2181344 bp Num of repeats: 4 Spacers: s44-s46 CRISPR array Location: 2181120-2181344 bp Num of repeats: 4 Spacers: s44-s46 CRISPR array Location: 2235132-2236802 bp Num of repeats: 26 Spacers: s47-s71 CRISPR array Location: 2235132-2236802 bp Num of repeats: 26 Spacers: s47-s71 CRISPR array Location: 2540386-2540811 bp Num of repeats: 7 Spacers: s72-s77 CRISPR array Location: 2540386-2540811 bp Num of repeats: 7 Spacers: s72-s77 Gene: cd09641:cas3HD Type: Type-I Location: 2703231-2705639 bp Gene: cd09693:cas5 Type: Type-I Location: 2705666-2706463 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2706479-2707492 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 2707512-2708987 bp Gene: pfam01881:cas6 Type: other Location: 2708992-2709729 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 2709987-2711096 bp CRISPR array Location: 2784377-2784471 bp Num of repeats: 2 Spacers: s78-s78 CRISPR array Location: 2784377-2784471 bp Num of repeats: 2 Spacers: s78-s78 CRISPR array Location: 3313701-3314316 bp Num of repeats: 10 Spacers: s79-s87 CRISPR array Location: 3313701-3314316 bp Num of repeats: 10 Spacers: s79-s87 Gene: cd09725:cas2 Type: universal Location: 3314500-3314766 bp Gene: cd09722:cas1 Type: universal Location: 3314769-3315749 bp Gene: pfam01930:cas4 Type: Type-I Location: 3315752-3316270 bp Gene: COG1203:cas3 Type: Type-I Location: 3316318-3318639 bp Gene: cd09693:cas5 Type: Type-I Location: 3318650-3319351 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 3319353-3320267 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 3320269-3322146 bp Gene: pfam01881:cas6 Type: other Location: 3322152-3322889 bp Gene: pfam13280:WYL Type: other Location: 3322967-3323881 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1327376-1327539 bp]: array | spacers
           [Locus range 1536320-1536744 bp]: array | spacers
           [Locus range 1647064-1647687 bp]: array | spacers
           [Locus range 1822345-1823757 bp]: array | spacers
           [Locus range 2134538-2134766 bp]: array | spacers
           [Locus range 2179160-2179319 bp]: array | spacers
           [Locus range 2181120-2181344 bp]: array | spacers
           [Locus range 2235132-2236802 bp]: array | spacers
           [Locus range 2540386-2540811 bp]: array | spacers
           [Locus range 2784377-2784471 bp]: array | spacers
           [Locus range 3313701-3314316 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)