CRISPRone

CRISPRone report for GCA_006381095.1_ASM638109v1

♦ Seq 1: PZRN01000002.1 Clostridioides difficile strain 20710 u00000crpx_c_020710, whole genome shotgun sequence

⇒Summary: seq-len = 4203477 bp; # of CRISPR array = 10; # of cas gene = 24  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1286330-1287284 bp 2 Locus 2: 1495672-1496359 bp 3 Locus 3: 1572306-1576319 bp 4 Locus 4: 1607043-1607337 bp 5 Locus 5: 1699720-1702231 bp 6 Locus 6: 1839508-1840593 bp 7 Locus 7: 2148369-2148463 bp 8 Locus 8: 2190084-2190709 bp 9 Locus 9: 2650957-2658832 bp 10 Locus 10: 3262353-3273468 bp 11 Locus 11: 3542222-3548686 bp Zoom in on locus 1 x15 Zoom in on locus 2 x11 Zoom in on locus 3 Zoom in on locus 4 x5 Zoom in on locus 5 x6 x5 Zoom in on locus 6 x17 Zoom in on locus 7 x2 Zoom in on locus 8 x10 Zoom in on locus 9 Zoom in on locus 10 x24 Zoom in on locus 11 x9 CRISPR array Location: 1286330-1287284 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 1286330-1287284 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 1495672-1496359 bp Num of repeats: 11 Spacers: s15-s24 CRISPR array Location: 1495672-1496359 bp Num of repeats: 11 Spacers: s15-s24 Gene: mkCas0136:csm2gr11 Type: Subtype-III-A Location: 1572306-1572905 bp Gene: unk Type: unknown Location: 1573073-1573540 bp Gene: COG2378:WYL Type: other Location: 1573645-1574562 bp Gene: cas14:cas14 Type: Type-V Location: 1575201-1576319 bp CRISPR array Location: 1607043-1607337 bp Num of repeats: 5 Spacers: s25-s28 CRISPR array Location: 1607043-1607337 bp Num of repeats: 5 Spacers: s25-s28 CRISPR array Location: 1699720-1700077 bp Num of repeats: 6 Spacers: s29-s33 CRISPR array Location: 1699720-1700077 bp Num of repeats: 6 Spacers: s29-s33 CRISPR array Location: 1701941-1702231 bp Num of repeats: 5 Spacers: s34-s37 CRISPR array Location: 1701941-1702231 bp Num of repeats: 5 Spacers: s34-s37 CRISPR array Location: 1839508-1840593 bp Num of repeats: 17 Spacers: s38-s53 CRISPR array Location: 1839508-1840593 bp Num of repeats: 17 Spacers: s38-s53 CRISPR array Location: 2148369-2148463 bp Num of repeats: 2 Spacers: s54-s54 CRISPR array Location: 2148369-2148463 bp Num of repeats: 2 Spacers: s54-s54 CRISPR array Location: 2190084-2190709 bp Num of repeats: 10 Spacers: s55-s63 CRISPR array Location: 2190084-2190709 bp Num of repeats: 10 Spacers: s55-s63 Gene: cd09641:cas3HD Type: Type-I Location: 2650957-2653365 bp Gene: cd09693:cas5 Type: Type-I Location: 2653392-2654198 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2654214-2655227 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 2655247-2656722 bp Gene: pfam01881:cas6 Type: other Location: 2656727-2657464 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 2657723-2658832 bp CRISPR array Location: 3262353-3263903 bp Num of repeats: 24 Spacers: s64-s86 CRISPR array Location: 3262353-3263903 bp Num of repeats: 24 Spacers: s64-s86 Gene: cls000290:cas8a3 Type: Subtype-I-A Location: 3263199-3263432 bp Gene: unk Type: unknown Location: 3263654-3263821 bp Gene: cd09725:cas2 Type: universal Location: 3264087-3264353 bp Gene: cd09722:cas1 Type: universal Location: 3264356-3265336 bp Gene: pfam01930:cas4 Type: Type-I Location: 3265339-3265857 bp Gene: COG1203:cas3 Type: Type-I Location: 3265905-3268226 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 3268237-3268938 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 3268940-3269854 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 3269856-3271733 bp Gene: pfam01881:cas6 Type: other Location: 3271739-3272533 bp Gene: pfam13280:WYL Type: other Location: 3272554-3273468 bp CRISPR array Location: 3542222-3542776 bp Num of repeats: 9 Spacers: s87-s94 CRISPR array Location: 3542222-3542776 bp Num of repeats: 9 Spacers: s87-s94 Gene: COG1203:cas3 Type: Type-I Location: 3543029-3545014 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 3545025-3546095 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 3546116-3547282 bp Gene: pfam01881:cas6 Type: other Location: 3547284-3548048 bp Gene: cd09693:cas5 Type: Type-I Location: 3548039-3548686 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1286330-1287284 bp]: array | spacers
           [Locus range 1495672-1496359 bp]: array | spacers
           [Locus range 1607043-1607337 bp]: array | spacers
           [Locus range 1699720-1700077 bp]: array | spacers
           [Locus range 1701941-1702231 bp]: array | spacers
           [Locus range 1839508-1840593 bp]: array | spacers
           [Locus range 2148369-2148463 bp]: array | spacers
           [Locus range 2190084-2190709 bp]: array | spacers
           [Locus range 3262353-3263903 bp]: array | spacers
           [Locus range 3542222-3542776 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)