CRISPRone

CRISPRone report for GCA_006381115.1_ASM638111v1

♦ Seq 1: PZRM01000002.1 Clostridioides difficile strain 20691 u00000xxpx_o_020691, whole genome shotgun sequence

⇒Summary: seq-len = 4207380 bp; # of CRISPR array = 9; # of cas gene = 15  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 774346-774440 bp 2 Locus 2: 996865-1007584 bp 3 Locus 3: 1509655-1510013 bp 4 Locus 4: 1583295-1591616 bp 5 Locus 5: 1754888-1755439 bp 6 Locus 6: 2136579-2136740 bp 7 Locus 7: 2477404-2478291 bp 8 Locus 8: 2655032-2655788 bp 9 Locus 9: 2766078-2766506 bp 10 Locus 10: 2978186-2979202 bp Zoom in on locus 1 x2 Zoom in on locus 2 x19 Zoom in on locus 3 x6 Zoom in on locus 4 Zoom in on locus 5 x9 Zoom in on locus 6 x3 Zoom in on locus 7 x14 Zoom in on locus 8 x12 Zoom in on locus 9 x7 Zoom in on locus 10 x16 CRISPR array Location: 774346-774440 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 774346-774440 bp Num of repeats: 2 Spacers: s1-s1 Gene: pfam13280:WYL Type: other Location: 996865-997752 bp Gene: pfam01881:cas6 Type: other Location: 997830-998567 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 998573-1000423 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 1000425-1001339 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 1001341-1002042 bp Gene: COG1203:cas3 Type: Type-I Location: 1002053-1004374 bp Gene: pfam01930:cas4 Type: Type-I Location: 1004389-1004940 bp Gene: cd09722:cas1 Type: universal Location: 1004943-1005923 bp Gene: cd09725:cas2 Type: universal Location: 1005926-1006192 bp CRISPR array Location: 1006376-1007584 bp Num of repeats: 19 Spacers: s2-s19 CRISPR array Location: 1006376-1007584 bp Num of repeats: 19 Spacers: s2-s19 CRISPR array Location: 1509655-1510013 bp Num of repeats: 6 Spacers: s20-s24 CRISPR array Location: 1509655-1510013 bp Num of repeats: 6 Spacers: s20-s24 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 1583295-1584404 bp Gene: unk Type: unknown Location: 1584838-1585014 bp Gene: pfam01881:cas6 Type: other Location: 1585115-1585852 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 1585857-1587332 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 1587352-1588368 bp Gene: cd09693:cas5 Type: Type-I Location: 1588384-1589181 bp Gene: cd09641:cas3HD Type: Type-I Location: 1589208-1591616 bp CRISPR array Location: 1754888-1755439 bp Num of repeats: 9 Spacers: s25-s32 CRISPR array Location: 1754888-1755439 bp Num of repeats: 9 Spacers: s25-s32 CRISPR array Location: 2136579-2136740 bp Num of repeats: 3 Spacers: s33-s34 CRISPR array Location: 2136579-2136740 bp Num of repeats: 3 Spacers: s33-s34 CRISPR array Location: 2477404-2478291 bp Num of repeats: 14 Spacers: s35-s47 CRISPR array Location: 2477404-2478291 bp Num of repeats: 14 Spacers: s35-s47 CRISPR array Location: 2655032-2655788 bp Num of repeats: 12 Spacers: s48-s58 CRISPR array Location: 2655032-2655788 bp Num of repeats: 12 Spacers: s48-s58 CRISPR array Location: 2766078-2766506 bp Num of repeats: 7 Spacers: s59-s64 CRISPR array Location: 2766078-2766506 bp Num of repeats: 7 Spacers: s59-s64 CRISPR array Location: 2978186-2979202 bp Num of repeats: 16 Spacers: s65-s79 CRISPR array Location: 2978186-2979202 bp Num of repeats: 16 Spacers: s65-s79 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 774346-774440 bp]: array | spacers
           [Locus range 1006376-1007584 bp]: array | spacers
           [Locus range 1509655-1510013 bp]: array | spacers
           [Locus range 1754888-1755439 bp]: array | spacers
           [Locus range 2136579-2136740 bp]: array | spacers
           [Locus range 2477404-2478291 bp]: array | spacers
           [Locus range 2655032-2655788 bp]: array | spacers
           [Locus range 2766078-2766506 bp]: array | spacers
           [Locus range 2978186-2979202 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)