CRISPRone

CRISPRone report for GCA_006408235.1_ASM640823v1

♦ Seq 1: PZOM01000001.1 Clostridioides difficile strain 21026 u00000crpx_c_021026, whole genome shotgun sequence

⇒Summary: seq-len = 4108298 bp; # of CRISPR array = 10; # of cas gene = 27  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1305925-1306879 bp 2 Locus 2: 1515256-1515943 bp 3 Locus 3: 1591888-1595901 bp 4 Locus 4: 1626622-1626916 bp 5 Locus 5: 1719286-1721796 bp 6 Locus 6: 1859050-1860135 bp 7 Locus 7: 2167895-2167989 bp 8 Locus 8: 2209610-2210235 bp 9 Locus 9: 2270508-2272297 bp 10 Locus 10: 2670444-2678319 bp 11 Locus 11: 3281774-3292889 bp 12 Locus 12: 3447013-3453545 bp Zoom in on locus 1 x15 Zoom in on locus 2 x11 Zoom in on locus 3 Zoom in on locus 4 x5 Zoom in on locus 5 x6 x5 Zoom in on locus 6 x17 Zoom in on locus 7 x2 Zoom in on locus 8 x10 Zoom in on locus 9 Zoom in on locus 10 Zoom in on locus 11 x24 Zoom in on locus 12 x10 CRISPR array Location: 1305925-1306879 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 1305925-1306879 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 1515256-1515943 bp Num of repeats: 11 Spacers: s15-s24 CRISPR array Location: 1515256-1515943 bp Num of repeats: 11 Spacers: s15-s24 Gene: mkCas0136:csm2gr11 Type: Subtype-III-A Location: 1591888-1592487 bp Gene: unk Type: unknown Location: 1592655-1593122 bp Gene: COG2378:WYL Type: other Location: 1593227-1594144 bp Gene: cas14:cas14 Type: Type-V Location: 1594783-1595901 bp CRISPR array Location: 1626622-1626916 bp Num of repeats: 5 Spacers: s25-s28 CRISPR array Location: 1626622-1626916 bp Num of repeats: 5 Spacers: s25-s28 CRISPR array Location: 1719286-1719643 bp Num of repeats: 6 Spacers: s29-s33 CRISPR array Location: 1719286-1719643 bp Num of repeats: 6 Spacers: s29-s33 CRISPR array Location: 1721506-1721796 bp Num of repeats: 5 Spacers: s34-s37 CRISPR array Location: 1721506-1721796 bp Num of repeats: 5 Spacers: s34-s37 CRISPR array Location: 1859050-1860135 bp Num of repeats: 17 Spacers: s38-s53 CRISPR array Location: 1859050-1860135 bp Num of repeats: 17 Spacers: s38-s53 CRISPR array Location: 2167895-2167989 bp Num of repeats: 2 Spacers: s54-s54 CRISPR array Location: 2167895-2167989 bp Num of repeats: 2 Spacers: s54-s54 CRISPR array Location: 2209610-2210235 bp Num of repeats: 10 Spacers: s55-s63 CRISPR array Location: 2209610-2210235 bp Num of repeats: 10 Spacers: s55-s63 Gene: mkCas0154:csm4gr5 Type: Subtype-III-A Location: 2270508-2271137 bp Gene: pfam13280:WYL Type: other Location: 2271279-2271611 bp Gene: pfam13280:WYL Type: other Location: 2271614-2272297 bp Gene: cd09641:cas3HD Type: Type-I Location: 2670444-2672852 bp Gene: cd09693:cas5 Type: Type-I Location: 2672879-2673685 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2673701-2674714 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 2674734-2676209 bp Gene: pfam01881:cas6 Type: other Location: 2676214-2676951 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 2677210-2678319 bp CRISPR array Location: 3281774-3283324 bp Num of repeats: 24 Spacers: s64-s86 CRISPR array Location: 3281774-3283324 bp Num of repeats: 24 Spacers: s64-s86 Gene: cls000290:cas8a3 Type: Subtype-I-A Location: 3282620-3282853 bp Gene: unk Type: unknown Location: 3283075-3283242 bp Gene: cd09725:cas2 Type: universal Location: 3283508-3283774 bp Gene: cd09722:cas1 Type: universal Location: 3283777-3284757 bp Gene: pfam01930:cas4 Type: Type-I Location: 3284760-3285278 bp Gene: COG1203:cas3 Type: Type-I Location: 3285326-3287647 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 3287658-3288359 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 3288361-3289275 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 3289277-3291154 bp Gene: pfam01881:cas6 Type: other Location: 3291160-3291954 bp Gene: pfam13280:WYL Type: other Location: 3291975-3292889 bp CRISPR array Location: 3447013-3447635 bp Num of repeats: 10 Spacers: s87-s95 CRISPR array Location: 3447013-3447635 bp Num of repeats: 10 Spacers: s87-s95 Gene: COG1203:cas3 Type: Type-I Location: 3447888-3449873 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 3449884-3450954 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 3450975-3452141 bp Gene: pfam01881:cas6 Type: other Location: 3452143-3452907 bp Gene: cd09693:cas5 Type: Type-I Location: 3452898-3453545 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1305925-1306879 bp]: array | spacers
           [Locus range 1515256-1515943 bp]: array | spacers
           [Locus range 1626622-1626916 bp]: array | spacers
           [Locus range 1719286-1719643 bp]: array | spacers
           [Locus range 1721506-1721796 bp]: array | spacers
           [Locus range 1859050-1860135 bp]: array | spacers
           [Locus range 2167895-2167989 bp]: array | spacers
           [Locus range 2209610-2210235 bp]: array | spacers
           [Locus range 3281774-3283324 bp]: array | spacers
           [Locus range 3447013-3447635 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)