CRISPRone

CRISPRone report for GCA_006408255.1_ASM640825v1

♦ Seq 1: PZON01000003.1 Clostridioides difficile strain 020472 u00000crpx_c_020472, whole genome shotgun sequence

⇒Summary: seq-len = 4267395 bp; # of CRISPR array = 11; # of cas gene = 15  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1517162-1517721 bp 2 Locus 2: 1628010-1628767 bp 3 Locus 3: 1719494-1724425 bp 4 Locus 4: 1862282-1863432 bp 5 Locus 5: 2204084-2204244 bp 6 Locus 6: 2585395-2586011 bp 7 Locus 7: 2749284-2757605 bp 8 Locus 8: 2830888-2831245 bp 9 Locus 9: 3365329-3376334 bp 10 Locus 10: 3598601-3598694 bp Zoom in on locus 1 x9 Zoom in on locus 2 x12 Zoom in on locus 3 x7 x4 x14 Zoom in on locus 4 x18 Zoom in on locus 5 x3 Zoom in on locus 6 x10 Zoom in on locus 7 Zoom in on locus 8 x6 Zoom in on locus 9 x23 Zoom in on locus 10 x2 CRISPR array Location: 1517162-1517721 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 1517162-1517721 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 1628010-1628767 bp Num of repeats: 12 Spacers: s9-s19 CRISPR array Location: 1628010-1628767 bp Num of repeats: 12 Spacers: s9-s19 CRISPR array Location: 1719494-1719918 bp Num of repeats: 7 Spacers: s20-s25 CRISPR array Location: 1719494-1719918 bp Num of repeats: 7 Spacers: s20-s25 CRISPR array Location: 1721522-1721746 bp Num of repeats: 4 Spacers: s26-s28 CRISPR array Location: 1721522-1721746 bp Num of repeats: 4 Spacers: s26-s28 CRISPR array Location: 1723539-1724425 bp Num of repeats: 14 Spacers: s29-s41 CRISPR array Location: 1723539-1724425 bp Num of repeats: 14 Spacers: s29-s41 CRISPR array Location: 1862282-1863432 bp Num of repeats: 18 Spacers: s42-s58 CRISPR array Location: 1862282-1863432 bp Num of repeats: 18 Spacers: s42-s58 CRISPR array Location: 2204084-2204244 bp Num of repeats: 3 Spacers: s59-s60 CRISPR array Location: 2204084-2204244 bp Num of repeats: 3 Spacers: s59-s60 CRISPR array Location: 2585395-2586011 bp Num of repeats: 10 Spacers: s61-s69 CRISPR array Location: 2585395-2586011 bp Num of repeats: 10 Spacers: s61-s69 Gene: cd09641:cas3HD Type: Type-I Location: 2749284-2751692 bp Gene: cd09693:cas5 Type: Type-I Location: 2751719-2752516 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2752532-2753548 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 2753568-2755043 bp Gene: pfam01881:cas6 Type: other Location: 2755048-2755785 bp Gene: unk Type: unknown Location: 2755886-2756062 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 2756496-2757605 bp CRISPR array Location: 2830888-2831245 bp Num of repeats: 6 Spacers: s70-s74 CRISPR array Location: 2830888-2831245 bp Num of repeats: 6 Spacers: s70-s74 CRISPR array Location: 3365329-3366796 bp Num of repeats: 23 Spacers: s75-s96 CRISPR array Location: 3365329-3366796 bp Num of repeats: 23 Spacers: s75-s96 Gene: cd09725:cas2 Type: universal Location: 3366980-3367246 bp Gene: cd09722:cas1 Type: universal Location: 3367249-3368229 bp Gene: pfam01930:cas4 Type: Type-I Location: 3368232-3368750 bp Gene: COG1203:cas3 Type: Type-I Location: 3368798-3371119 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 3371130-3371831 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 3371833-3372747 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 3372749-3374599 bp Gene: pfam01881:cas6 Type: other Location: 3374605-3375399 bp Gene: pfam13280:WYL Type: other Location: 3375420-3376334 bp CRISPR array Location: 3598601-3598694 bp Num of repeats: 2 Spacers: s97-s97 CRISPR array Location: 3598601-3598694 bp Num of repeats: 2 Spacers: s97-s97 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1517162-1517721 bp]: array | spacers
           [Locus range 1628010-1628767 bp]: array | spacers
           [Locus range 1719494-1719918 bp]: array | spacers
           [Locus range 1721522-1721746 bp]: array | spacers
           [Locus range 1723539-1724425 bp]: array | spacers
           [Locus range 1862282-1863432 bp]: array | spacers
           [Locus range 2204084-2204244 bp]: array | spacers
           [Locus range 2585395-2586011 bp]: array | spacers
           [Locus range 2830888-2831245 bp]: array | spacers
           [Locus range 3365329-3366796 bp]: array | spacers
           [Locus range 3598601-3598694 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)