CRISPRone

CRISPRone report for GCA_006408285.1_ASM640828v1

♦ Seq 1: PZOO01000001.1 Clostridioides difficile strain 21025 u00000xxpx_o_021025, whole genome shotgun sequence

⇒Summary: seq-len = 4210745 bp; # of CRISPR array = 9; # of cas gene = 15  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1299987-1311196 bp 2 Locus 2: 1822140-1822698 bp 3 Locus 3: 1895965-1903830 bp 4 Locus 4: 2065807-2066822 bp 5 Locus 5: 2449280-2450687 bp 6 Locus 6: 2501599-2501759 bp 7 Locus 7: 2819628-2820843 bp 8 Locus 8: 3003824-3004913 bp 9 Locus 9: 3115238-3115532 bp 10 Locus 10: 3323647-3324005 bp Zoom in on locus 1 x26 Zoom in on locus 2 x9 Zoom in on locus 3 Zoom in on locus 4 x16 Zoom in on locus 5 x22 Zoom in on locus 6 x3 Zoom in on locus 7 x19 Zoom in on locus 8 x17 Zoom in on locus 9 x5 Zoom in on locus 10 x6 Gene: pfam13280:WYL Type: other Location: 1299987-1300874 bp Gene: pfam01881:cas6 Type: other Location: 1300952-1301689 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 1301695-1303572 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 1303574-1304488 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 1304490-1305191 bp Gene: COG1203:cas3 Type: Type-I Location: 1305202-1307523 bp Gene: pfam01930:cas4 Type: Type-I Location: 1307538-1308089 bp Gene: cd09722:cas1 Type: universal Location: 1308092-1309072 bp Gene: cd09725:cas2 Type: universal Location: 1309075-1309341 bp CRISPR array Location: 1309525-1311196 bp Num of repeats: 26 Spacers: s1-s25 CRISPR array Location: 1309525-1311196 bp Num of repeats: 26 Spacers: s1-s25 CRISPR array Location: 1822140-1822698 bp Num of repeats: 9 Spacers: s26-s33 CRISPR array Location: 1822140-1822698 bp Num of repeats: 9 Spacers: s26-s33 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 1895965-1897074 bp Gene: pfam01881:cas6 Type: other Location: 1897332-1898069 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 1898074-1899549 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 1899569-1900582 bp Gene: cd09693:cas5 Type: Type-I Location: 1900598-1901395 bp Gene: cd09641:cas3HD Type: Type-I Location: 1901422-1903830 bp CRISPR array Location: 2065807-2066822 bp Num of repeats: 16 Spacers: s34-s48 CRISPR array Location: 2065807-2066822 bp Num of repeats: 16 Spacers: s34-s48 CRISPR array Location: 2449280-2450687 bp Num of repeats: 22 Spacers: s49-s69 CRISPR array Location: 2449280-2450687 bp Num of repeats: 22 Spacers: s49-s69 CRISPR array Location: 2501599-2501759 bp Num of repeats: 3 Spacers: s70-s71 CRISPR array Location: 2501599-2501759 bp Num of repeats: 3 Spacers: s70-s71 CRISPR array Location: 2819628-2820843 bp Num of repeats: 19 Spacers: s72-s89 CRISPR array Location: 2819628-2820843 bp Num of repeats: 19 Spacers: s72-s89 CRISPR array Location: 3003824-3004913 bp Num of repeats: 17 Spacers: s90-s105 CRISPR array Location: 3003824-3004913 bp Num of repeats: 17 Spacers: s90-s105 CRISPR array Location: 3115238-3115532 bp Num of repeats: 5 Spacers: s106-s109 CRISPR array Location: 3115238-3115532 bp Num of repeats: 5 Spacers: s106-s109 CRISPR array Location: 3323647-3324005 bp Num of repeats: 6 Spacers: s110-s114 CRISPR array Location: 3323647-3324005 bp Num of repeats: 6 Spacers: s110-s114 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1309525-1311196 bp]: array | spacers
           [Locus range 1822140-1822698 bp]: array | spacers
           [Locus range 2065807-2066822 bp]: array | spacers
           [Locus range 2449280-2450687 bp]: array | spacers
           [Locus range 2501599-2501759 bp]: array | spacers
           [Locus range 2819628-2820843 bp]: array | spacers
           [Locus range 3003824-3004913 bp]: array | spacers
           [Locus range 3115238-3115532 bp]: array | spacers
           [Locus range 3323647-3324005 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)