CRISPRone

CRISPRone report for GCA_006408325.1_ASM640832v1

♦ Seq 1: PZOR01000001.1 Clostridioides difficile strain 20697 u00000xxpx_o_020697, whole genome shotgun sequence

⇒Summary: seq-len = 4226490 bp; # of CRISPR array = 10; # of cas gene = 24  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 669909-676442 bp 2 Locus 2: 945222-955398 bp 3 Locus 3: 1559767-1567642 bp 4 Locus 4: 2027890-2028516 bp 5 Locus 5: 2070136-2070231 bp 6 Locus 6: 2378005-2379089 bp 7 Locus 7: 2516322-2518832 bp 8 Locus 8: 2611216-2611509 bp 9 Locus 9: 2642234-2646247 bp 10 Locus 10: 2722195-2722881 bp 11 Locus 11: 2931268-2932221 bp Zoom in on locus 1 x10 Zoom in on locus 2 x23 Zoom in on locus 3 Zoom in on locus 4 x10 Zoom in on locus 5 x2 Zoom in on locus 6 x17 Zoom in on locus 7 x5 x6 Zoom in on locus 8 x5 Zoom in on locus 9 Zoom in on locus 10 x11 Zoom in on locus 11 x15 Gene: cd09693:cas5 Type: Type-I Location: 669909-670556 bp Gene: pfam01881:cas6 Type: other Location: 670547-671311 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 671313-672479 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 672500-673570 bp Gene: COG1203:cas3 Type: Type-I Location: 673581-675566 bp CRISPR array Location: 675819-676442 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 675819-676442 bp Num of repeats: 10 Spacers: s1-s9 Gene: pfam13280:WYL Type: other Location: 945222-946109 bp Gene: pfam01881:cas6 Type: other Location: 946187-946924 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 946930-948807 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 948809-949723 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 949725-950426 bp Gene: COG1203:cas3 Type: Type-I Location: 950437-952758 bp Gene: pfam01930:cas4 Type: Type-I Location: 952773-953324 bp Gene: cd09722:cas1 Type: universal Location: 953327-954307 bp Gene: cd09725:cas2 Type: universal Location: 954310-954576 bp CRISPR array Location: 954760-956245 bp Num of repeats: 23 Spacers: s10-s31 CRISPR array Location: 954760-956245 bp Num of repeats: 23 Spacers: s10-s31 Gene: unk Type: unknown Location: 954776-954943 bp Gene: cls000290:cas8a3 Type: Subtype-I-A Location: 955165-955398 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 1559767-1560876 bp Gene: pfam01881:cas6 Type: other Location: 1561135-1561872 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 1561877-1563352 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 1563372-1564385 bp Gene: cd09693:cas5 Type: Type-I Location: 1564401-1565207 bp Gene: cd09641:cas3HD Type: Type-I Location: 1565234-1567642 bp CRISPR array Location: 2027890-2028516 bp Num of repeats: 10 Spacers: s32-s40 CRISPR array Location: 2027890-2028516 bp Num of repeats: 10 Spacers: s32-s40 CRISPR array Location: 2070136-2070231 bp Num of repeats: 2 Spacers: s41-s41 CRISPR array Location: 2070136-2070231 bp Num of repeats: 2 Spacers: s41-s41 CRISPR array Location: 2378005-2379089 bp Num of repeats: 17 Spacers: s42-s57 CRISPR array Location: 2378005-2379089 bp Num of repeats: 17 Spacers: s42-s57 CRISPR array Location: 2516322-2516611 bp Num of repeats: 5 Spacers: s58-s61 CRISPR array Location: 2516322-2516611 bp Num of repeats: 5 Spacers: s58-s61 CRISPR array Location: 2518476-2518832 bp Num of repeats: 6 Spacers: s62-s66 CRISPR array Location: 2518476-2518832 bp Num of repeats: 6 Spacers: s62-s66 CRISPR array Location: 2611216-2611509 bp Num of repeats: 5 Spacers: s67-s70 CRISPR array Location: 2611216-2611509 bp Num of repeats: 5 Spacers: s67-s70 Gene: cas14:cas14 Type: Type-V Location: 2642234-2643352 bp Gene: COG2378:WYL Type: other Location: 2643991-2644902 bp Gene: unk Type: unknown Location: 2645013-2645480 bp Gene: mkCas0136:csm2gr11 Type: Subtype-III-A Location: 2645648-2646247 bp CRISPR array Location: 2722195-2722881 bp Num of repeats: 11 Spacers: s71-s80 CRISPR array Location: 2722195-2722881 bp Num of repeats: 11 Spacers: s71-s80 CRISPR array Location: 2931268-2932221 bp Num of repeats: 15 Spacers: s81-s94 CRISPR array Location: 2931268-2932221 bp Num of repeats: 15 Spacers: s81-s94 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 675819-676442 bp]: array | spacers
           [Locus range 954760-956245 bp]: array | spacers
           [Locus range 2027890-2028516 bp]: array | spacers
           [Locus range 2070136-2070231 bp]: array | spacers
           [Locus range 2378005-2379089 bp]: array | spacers
           [Locus range 2516322-2516611 bp]: array | spacers
           [Locus range 2518476-2518832 bp]: array | spacers
           [Locus range 2611216-2611509 bp]: array | spacers
           [Locus range 2722195-2722881 bp]: array | spacers
           [Locus range 2931268-2932221 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)