CRISPRone

CRISPRone report for GCA_006408335.1_ASM640833v1

♦ Seq 1: PZOS01000003.1 Clostridioides difficile strain 22457 u00000crpx_c_022457, whole genome shotgun sequence

⇒Summary: seq-len = 4336356 bp; # of CRISPR array = 9; # of cas gene = 15  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1386157-1387041 bp 2 Locus 2: 1596596-1597355 bp 3 Locus 3: 1707680-1708170 bp 4 Locus 4: 1886794-1887877 bp 5 Locus 5: 2249990-2250150 bp 6 Locus 6: 2636856-2637742 bp 7 Locus 7: 2799723-2808069 bp 8 Locus 8: 2881352-2881909 bp 9 Locus 9: 3501615-3512522 bp 10 Locus 10: 3727010-3727103 bp Zoom in on locus 1 x14 Zoom in on locus 2 x12 Zoom in on locus 3 x8 Zoom in on locus 4 x17 Zoom in on locus 5 x3 Zoom in on locus 6 x14 Zoom in on locus 7 Zoom in on locus 8 x9 Zoom in on locus 9 x21 Zoom in on locus 10 x2 CRISPR array Location: 1386157-1387041 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 1386157-1387041 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 1596596-1597355 bp Num of repeats: 12 Spacers: s14-s24 CRISPR array Location: 1596596-1597355 bp Num of repeats: 12 Spacers: s14-s24 CRISPR array Location: 1707680-1708170 bp Num of repeats: 8 Spacers: s25-s31 CRISPR array Location: 1707680-1708170 bp Num of repeats: 8 Spacers: s25-s31 CRISPR array Location: 1886794-1887877 bp Num of repeats: 17 Spacers: s32-s47 CRISPR array Location: 1886794-1887877 bp Num of repeats: 17 Spacers: s32-s47 CRISPR array Location: 2249990-2250150 bp Num of repeats: 3 Spacers: s48-s49 CRISPR array Location: 2249990-2250150 bp Num of repeats: 3 Spacers: s48-s49 CRISPR array Location: 2636856-2637742 bp Num of repeats: 14 Spacers: s50-s62 CRISPR array Location: 2636856-2637742 bp Num of repeats: 14 Spacers: s50-s62 Gene: cd09641:cas3HD Type: Type-I Location: 2799723-2802131 bp Gene: cd09693:cas5 Type: Type-I Location: 2802158-2802955 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2802971-2803987 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 2804007-2805482 bp Gene: pfam01881:cas6 Type: other Location: 2805487-2806224 bp Gene: unk Type: unknown Location: 2806325-2806501 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 2806960-2808069 bp CRISPR array Location: 2881352-2881909 bp Num of repeats: 9 Spacers: s63-s70 CRISPR array Location: 2881352-2881909 bp Num of repeats: 9 Spacers: s63-s70 CRISPR array Location: 3501615-3502957 bp Num of repeats: 21 Spacers: s71-s90 CRISPR array Location: 3501615-3502957 bp Num of repeats: 21 Spacers: s71-s90 Gene: cd09725:cas2 Type: universal Location: 3503141-3503407 bp Gene: cd09722:cas1 Type: universal Location: 3503410-3504390 bp Gene: pfam01930:cas4 Type: Type-I Location: 3504393-3504911 bp Gene: COG1203:cas3 Type: Type-I Location: 3504959-3507280 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 3507291-3507992 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 3507994-3508908 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 3508910-3510787 bp Gene: pfam01881:cas6 Type: other Location: 3510793-3511587 bp Gene: pfam13280:WYL Type: other Location: 3511608-3512522 bp CRISPR array Location: 3727010-3727103 bp Num of repeats: 2 Spacers: s91-s91 CRISPR array Location: 3727010-3727103 bp Num of repeats: 2 Spacers: s91-s91 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1386157-1387041 bp]: array | spacers
           [Locus range 1596596-1597355 bp]: array | spacers
           [Locus range 1707680-1708170 bp]: array | spacers
           [Locus range 1886794-1887877 bp]: array | spacers
           [Locus range 2249990-2250150 bp]: array | spacers
           [Locus range 2636856-2637742 bp]: array | spacers
           [Locus range 2881352-2881909 bp]: array | spacers
           [Locus range 3501615-3502957 bp]: array | spacers
           [Locus range 3727010-3727103 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)