CRISPRone

CRISPRone report for GCA_006408375.1_ASM640837v1

♦ Seq 1: PZOV01000002.1 Clostridioides difficile strain 20700 u00000crpx_c_020700, whole genome shotgun sequence

⇒Summary: seq-len = 4052310 bp; # of CRISPR array = 8; # of cas gene = 14  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1300126-1300419 bp 2 Locus 2: 1508561-1508982 bp 3 Locus 3: 1619276-1619503 bp 4 Locus 4: 1794879-1795240 bp 5 Locus 5: 2113101-2113262 bp 6 Locus 6: 2268717-2280773 bp 7 Locus 7: 2470276-2471026 bp 8 Locus 8: 2632994-2640859 bp 9 Locus 9: 2714107-2714664 bp Zoom in on locus 1 x5 Zoom in on locus 2 x7 Zoom in on locus 3 x4 Zoom in on locus 4 x6 Zoom in on locus 5 x3 Zoom in on locus 6 x46 Zoom in on locus 7 x12 Zoom in on locus 8 Zoom in on locus 9 x9 CRISPR array Location: 1300126-1300419 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 1300126-1300419 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 1508561-1508982 bp Num of repeats: 7 Spacers: s5-s10 CRISPR array Location: 1508561-1508982 bp Num of repeats: 7 Spacers: s5-s10 CRISPR array Location: 1619276-1619503 bp Num of repeats: 4 Spacers: s11-s13 CRISPR array Location: 1619276-1619503 bp Num of repeats: 4 Spacers: s11-s13 CRISPR array Location: 1794879-1795240 bp Num of repeats: 6 Spacers: s14-s18 CRISPR array Location: 1794879-1795240 bp Num of repeats: 6 Spacers: s14-s18 CRISPR array Location: 2113101-2113262 bp Num of repeats: 3 Spacers: s19-s20 CRISPR array Location: 2113101-2113262 bp Num of repeats: 3 Spacers: s19-s20 Gene: cd09725:cas2 Type: universal Location: 2268717-2269007 bp Gene: cd09722:cas1 Type: universal Location: 2269218-2270225 bp Gene: pfam01930:cas4 Type: Type-I Location: 2270251-2270745 bp CRISPR array Location: 2270830-2273831 bp Num of repeats: 46 Spacers: s21-s65 CRISPR array Location: 2270830-2273831 bp Num of repeats: 46 Spacers: s21-s65 Gene: cd09641:cas3HD Type: Type-I Location: 2274021-2276579 bp Gene: cd09693:cas5 Type: Type-I Location: 2276603-2277343 bp Gene: pfam05107:cas7b Type: Type-I Location: 2277345-2278334 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 2278327-2280066 bp Gene: cd09652:cas6 Type: other Location: 2280078-2280773 bp CRISPR array Location: 2470276-2471026 bp Num of repeats: 12 Spacers: s66-s76 CRISPR array Location: 2470276-2471026 bp Num of repeats: 12 Spacers: s66-s76 Gene: cd09641:cas3HD Type: Type-I Location: 2632994-2635402 bp Gene: cd09693:cas5 Type: Type-I Location: 2635429-2636226 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2636242-2637255 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 2637275-2638750 bp Gene: pfam01881:cas6 Type: other Location: 2638755-2639492 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 2639750-2640859 bp CRISPR array Location: 2714107-2714664 bp Num of repeats: 9 Spacers: s77-s84 CRISPR array Location: 2714107-2714664 bp Num of repeats: 9 Spacers: s77-s84 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1300126-1300419 bp]: array | spacers
           [Locus range 1508561-1508982 bp]: array | spacers
           [Locus range 1619276-1619503 bp]: array | spacers
           [Locus range 1794879-1795240 bp]: array | spacers
           [Locus range 2113101-2113262 bp]: array | spacers
           [Locus range 2270830-2273831 bp]: array | spacers
           [Locus range 2470276-2471026 bp]: array | spacers
           [Locus range 2714107-2714664 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)