CRISPRone

CRISPRone report for GCA_006408415.1_ASM640841v1

♦ Seq 1: PZOT01000002.1 Clostridioides difficile strain 21024 u00000xxpx_o_021024, whole genome shotgun sequence

⇒Summary: seq-len = 4057018 bp; # of CRISPR array = 8; # of cas gene = 14  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1358614-1359172 bp 2 Locus 2: 1432419-1440284 bp 3 Locus 3: 1602252-1603003 bp 4 Locus 4: 1792505-1804561 bp 5 Locus 5: 1960016-1960178 bp 6 Locus 6: 2278039-2278399 bp 7 Locus 7: 2453781-2454007 bp 8 Locus 8: 2564302-2564722 bp 9 Locus 9: 2772854-2773146 bp Zoom in on locus 1 x9 Zoom in on locus 2 Zoom in on locus 3 x12 Zoom in on locus 4 x46 Zoom in on locus 5 x3 Zoom in on locus 6 x6 Zoom in on locus 7 x4 Zoom in on locus 8 x7 Zoom in on locus 9 x5 CRISPR array Location: 1358614-1359172 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 1358614-1359172 bp Num of repeats: 9 Spacers: s1-s8 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 1432419-1433528 bp Gene: pfam01881:cas6 Type: other Location: 1433786-1434523 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 1434528-1436003 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 1436023-1437036 bp Gene: cd09693:cas5 Type: Type-I Location: 1437052-1437849 bp Gene: cd09641:cas3HD Type: Type-I Location: 1437876-1440284 bp CRISPR array Location: 1602252-1603003 bp Num of repeats: 12 Spacers: s9-s19 CRISPR array Location: 1602252-1603003 bp Num of repeats: 12 Spacers: s9-s19 Gene: cd09652:cas6 Type: other Location: 1792505-1793200 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 1793212-1794951 bp Gene: pfam05107:cas7b Type: Type-I Location: 1794944-1795933 bp Gene: cd09693:cas5 Type: Type-I Location: 1795935-1796675 bp Gene: cd09641:cas3HD Type: Type-I Location: 1796699-1799257 bp CRISPR array Location: 1799447-1802449 bp Num of repeats: 46 Spacers: s20-s64 CRISPR array Location: 1799447-1802449 bp Num of repeats: 46 Spacers: s20-s64 Gene: pfam01930:cas4 Type: Type-I Location: 1802533-1803027 bp Gene: cd09722:cas1 Type: universal Location: 1803053-1804060 bp Gene: cd09725:cas2 Type: universal Location: 1804271-1804561 bp CRISPR array Location: 1960016-1960178 bp Num of repeats: 3 Spacers: s65-s66 CRISPR array Location: 1960016-1960178 bp Num of repeats: 3 Spacers: s65-s66 CRISPR array Location: 2278039-2278399 bp Num of repeats: 6 Spacers: s67-s71 CRISPR array Location: 2278039-2278399 bp Num of repeats: 6 Spacers: s67-s71 CRISPR array Location: 2453781-2454007 bp Num of repeats: 4 Spacers: s72-s74 CRISPR array Location: 2453781-2454007 bp Num of repeats: 4 Spacers: s72-s74 CRISPR array Location: 2564302-2564722 bp Num of repeats: 7 Spacers: s75-s80 CRISPR array Location: 2564302-2564722 bp Num of repeats: 7 Spacers: s75-s80 CRISPR array Location: 2772854-2773146 bp Num of repeats: 5 Spacers: s81-s84 CRISPR array Location: 2772854-2773146 bp Num of repeats: 5 Spacers: s81-s84 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1358614-1359172 bp]: array | spacers
           [Locus range 1602252-1603003 bp]: array | spacers
           [Locus range 1799447-1802449 bp]: array | spacers
           [Locus range 1960016-1960178 bp]: array | spacers
           [Locus range 2278039-2278399 bp]: array | spacers
           [Locus range 2453781-2454007 bp]: array | spacers
           [Locus range 2564302-2564722 bp]: array | spacers
           [Locus range 2772854-2773146 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)