CRISPRone

CRISPRone report for GCA_006408435.1_ASM640843v1

♦ Seq 1: PZOU01000002.1 Clostridioides difficile strain 20265 u00000crpx_c_020265, whole genome shotgun sequence

⇒Summary: seq-len = 4172567 bp; # of CRISPR array = 10; # of cas gene = 24  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1300668-1301626 bp 2 Locus 2: 1510013-1510700 bp 3 Locus 3: 1586645-1590658 bp 4 Locus 4: 1621381-1621675 bp 5 Locus 5: 1714056-1716567 bp 6 Locus 6: 1853840-1854664 bp 7 Locus 7: 2162435-2162529 bp 8 Locus 8: 2204149-2204774 bp 9 Locus 9: 2665010-2672885 bp 10 Locus 10: 3248347-3259515 bp 11 Locus 11: 3495282-3501814 bp Zoom in on locus 1 x15 Zoom in on locus 2 x11 Zoom in on locus 3 Zoom in on locus 4 x5 Zoom in on locus 5 x6 x5 Zoom in on locus 6 x13 Zoom in on locus 7 x2 Zoom in on locus 8 x10 Zoom in on locus 9 Zoom in on locus 10 x24 Zoom in on locus 11 x10 CRISPR array Location: 1300668-1301626 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 1300668-1301626 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 1510013-1510700 bp Num of repeats: 11 Spacers: s15-s24 CRISPR array Location: 1510013-1510700 bp Num of repeats: 11 Spacers: s15-s24 Gene: mkCas0136:csm2gr11 Type: Subtype-III-A Location: 1586645-1587244 bp Gene: unk Type: unknown Location: 1587412-1587879 bp Gene: COG2378:WYL Type: other Location: 1587984-1588901 bp Gene: cas14:cas14 Type: Type-V Location: 1589540-1590658 bp CRISPR array Location: 1621381-1621675 bp Num of repeats: 5 Spacers: s25-s28 CRISPR array Location: 1621381-1621675 bp Num of repeats: 5 Spacers: s25-s28 CRISPR array Location: 1714056-1714413 bp Num of repeats: 6 Spacers: s29-s33 CRISPR array Location: 1714056-1714413 bp Num of repeats: 6 Spacers: s29-s33 CRISPR array Location: 1716277-1716567 bp Num of repeats: 5 Spacers: s34-s37 CRISPR array Location: 1716277-1716567 bp Num of repeats: 5 Spacers: s34-s37 CRISPR array Location: 1853840-1854664 bp Num of repeats: 13 Spacers: s38-s49 CRISPR array Location: 1853840-1854664 bp Num of repeats: 13 Spacers: s38-s49 CRISPR array Location: 2162435-2162529 bp Num of repeats: 2 Spacers: s50-s50 CRISPR array Location: 2162435-2162529 bp Num of repeats: 2 Spacers: s50-s50 CRISPR array Location: 2204149-2204774 bp Num of repeats: 10 Spacers: s51-s59 CRISPR array Location: 2204149-2204774 bp Num of repeats: 10 Spacers: s51-s59 Gene: cd09641:cas3HD Type: Type-I Location: 2665010-2667418 bp Gene: cd09693:cas5 Type: Type-I Location: 2667445-2668251 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2668267-2669280 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 2669300-2670775 bp Gene: pfam01881:cas6 Type: other Location: 2670780-2671517 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 2671776-2672885 bp CRISPR array Location: 3248347-3249899 bp Num of repeats: 24 Spacers: s60-s82 CRISPR array Location: 3248347-3249899 bp Num of repeats: 24 Spacers: s60-s82 Gene: cls000290:cas8a3 Type: Subtype-I-A Location: 3249193-3249426 bp Gene: unk Type: unknown Location: 3249583-3249750 bp Gene: cd09725:cas2 Type: universal Location: 3250083-3250349 bp Gene: cd09722:cas1 Type: universal Location: 3250352-3251332 bp Gene: pfam01930:cas4 Type: Type-I Location: 3251335-3251853 bp Gene: COG1203:cas3 Type: Type-I Location: 3251901-3254222 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 3254233-3254934 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 3254936-3255850 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 3255852-3257729 bp Gene: pfam01881:cas6 Type: other Location: 3257735-3258529 bp Gene: pfam13280:WYL Type: other Location: 3258550-3259515 bp CRISPR array Location: 3495282-3495904 bp Num of repeats: 10 Spacers: s83-s91 CRISPR array Location: 3495282-3495904 bp Num of repeats: 10 Spacers: s83-s91 Gene: COG1203:cas3 Type: Type-I Location: 3496157-3498142 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 3498153-3499223 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 3499244-3500410 bp Gene: pfam01881:cas6 Type: other Location: 3500412-3501176 bp Gene: cd09693:cas5 Type: Type-I Location: 3501167-3501814 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1300668-1301626 bp]: array | spacers
           [Locus range 1510013-1510700 bp]: array | spacers
           [Locus range 1621381-1621675 bp]: array | spacers
           [Locus range 1714056-1714413 bp]: array | spacers
           [Locus range 1716277-1716567 bp]: array | spacers
           [Locus range 1853840-1854664 bp]: array | spacers
           [Locus range 2162435-2162529 bp]: array | spacers
           [Locus range 2204149-2204774 bp]: array | spacers
           [Locus range 3248347-3249899 bp]: array | spacers
           [Locus range 3495282-3495904 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)