CRISPRone

CRISPRone report for GCA_006454545.1_ASM645454v1

♦ Seq 1: PZOP01000001.1 Clostridioides difficile strain 20475 u00000crpx_c_020475, whole genome shotgun sequence

⇒Summary: seq-len = 4219339 bp; # of CRISPR array = 10; # of cas gene = 24  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1302337-1303291 bp 2 Locus 2: 1511671-1512358 bp 3 Locus 3: 1588305-1592316 bp 4 Locus 4: 1623041-1623335 bp 5 Locus 5: 1715713-1718224 bp 6 Locus 6: 1855489-1856574 bp 7 Locus 7: 2164328-2164422 bp 8 Locus 8: 2206041-2206666 bp 9 Locus 9: 2666892-2674767 bp 10 Locus 10: 3278213-3289379 bp 11 Locus 11: 3558077-3564609 bp Zoom in on locus 1 x15 Zoom in on locus 2 x11 Zoom in on locus 3 Zoom in on locus 4 x5 Zoom in on locus 5 x6 x5 Zoom in on locus 6 x17 Zoom in on locus 7 x2 Zoom in on locus 8 x10 Zoom in on locus 9 Zoom in on locus 10 x24 Zoom in on locus 11 x10 CRISPR array Location: 1302337-1303291 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 1302337-1303291 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 1511671-1512358 bp Num of repeats: 11 Spacers: s15-s24 CRISPR array Location: 1511671-1512358 bp Num of repeats: 11 Spacers: s15-s24 Gene: mkCas0136:csm2gr11 Type: Subtype-III-A Location: 1588305-1588904 bp Gene: unk Type: unknown Location: 1589072-1589356 bp Gene: COG2378:WYL Type: other Location: 1589642-1590559 bp Gene: cas14:cas14 Type: Type-V Location: 1591198-1592316 bp CRISPR array Location: 1623041-1623335 bp Num of repeats: 5 Spacers: s25-s28 CRISPR array Location: 1623041-1623335 bp Num of repeats: 5 Spacers: s25-s28 CRISPR array Location: 1715713-1716070 bp Num of repeats: 6 Spacers: s29-s33 CRISPR array Location: 1715713-1716070 bp Num of repeats: 6 Spacers: s29-s33 CRISPR array Location: 1717934-1718224 bp Num of repeats: 5 Spacers: s34-s37 CRISPR array Location: 1717934-1718224 bp Num of repeats: 5 Spacers: s34-s37 CRISPR array Location: 1855489-1856574 bp Num of repeats: 17 Spacers: s38-s53 CRISPR array Location: 1855489-1856574 bp Num of repeats: 17 Spacers: s38-s53 CRISPR array Location: 2164328-2164422 bp Num of repeats: 2 Spacers: s54-s54 CRISPR array Location: 2164328-2164422 bp Num of repeats: 2 Spacers: s54-s54 CRISPR array Location: 2206041-2206666 bp Num of repeats: 10 Spacers: s55-s63 CRISPR array Location: 2206041-2206666 bp Num of repeats: 10 Spacers: s55-s63 Gene: cd09641:cas3HD Type: Type-I Location: 2666892-2669300 bp Gene: cd09693:cas5 Type: Type-I Location: 2669327-2670133 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2670149-2671162 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 2671182-2672657 bp Gene: pfam01881:cas6 Type: other Location: 2672662-2673399 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 2673658-2674767 bp CRISPR array Location: 3278213-3279763 bp Num of repeats: 24 Spacers: s64-s86 CRISPR array Location: 3278213-3279763 bp Num of repeats: 24 Spacers: s64-s86 Gene: cls000290:cas8a3 Type: Subtype-I-A Location: 3279059-3279292 bp Gene: unk Type: unknown Location: 3279514-3279681 bp Gene: cd09725:cas2 Type: universal Location: 3279947-3280213 bp Gene: cd09722:cas1 Type: universal Location: 3280216-3281196 bp Gene: pfam01930:cas4 Type: Type-I Location: 3281199-3281717 bp Gene: COG1203:cas3 Type: Type-I Location: 3281765-3284086 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 3284097-3284798 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 3284800-3285714 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 3285716-3287593 bp Gene: pfam01881:cas6 Type: other Location: 3287599-3288393 bp Gene: pfam13280:WYL Type: other Location: 3288414-3289379 bp CRISPR array Location: 3558077-3558699 bp Num of repeats: 10 Spacers: s87-s95 CRISPR array Location: 3558077-3558699 bp Num of repeats: 10 Spacers: s87-s95 Gene: COG1203:cas3 Type: Type-I Location: 3558952-3560937 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 3560948-3562018 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 3562039-3563205 bp Gene: pfam01881:cas6 Type: other Location: 3563207-3563971 bp Gene: cd09693:cas5 Type: Type-I Location: 3563962-3564609 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1302337-1303291 bp]: array | spacers
           [Locus range 1511671-1512358 bp]: array | spacers
           [Locus range 1623041-1623335 bp]: array | spacers
           [Locus range 1715713-1716070 bp]: array | spacers
           [Locus range 1717934-1718224 bp]: array | spacers
           [Locus range 1855489-1856574 bp]: array | spacers
           [Locus range 2164328-2164422 bp]: array | spacers
           [Locus range 2206041-2206666 bp]: array | spacers
           [Locus range 3278213-3279763 bp]: array | spacers
           [Locus range 3558077-3558699 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)