CRISPRone

CRISPRone report for GCA_006454555.1_ASM645455v1

♦ Seq 1: PZOQ01000001.1 Clostridioides difficile strain 22456 u00000crpx_c_022456, whole genome shotgun sequence

⇒Summary: seq-len = 4322072 bp; # of CRISPR array = 10; # of cas gene = 15  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 301042-303654 bp 2 Locus 2: 1591514-1592338 bp 3 Locus 3: 1702658-1704467 bp 4 Locus 4: 1785077-1785367 bp 5 Locus 5: 1920490-1921825 bp 6 Locus 6: 2239699-2239989 bp 7 Locus 7: 2612791-2613342 bp 8 Locus 8: 2776762-2785108 bp 9 Locus 9: 2858391-2858886 bp 10 Locus 10: 3378337-3388259 bp Zoom in on locus 1 x4 x11 Zoom in on locus 2 x13 Zoom in on locus 3 x28 Zoom in on locus 4 x5 Zoom in on locus 5 x21 Zoom in on locus 6 x5 Zoom in on locus 7 x9 Zoom in on locus 8 Zoom in on locus 9 x8 Zoom in on locus 10 x6 CRISPR array Location: 301042-301264 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 301042-301264 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 302968-303654 bp Num of repeats: 11 Spacers: s4-s13 CRISPR array Location: 302968-303654 bp Num of repeats: 11 Spacers: s4-s13 CRISPR array Location: 1591514-1592338 bp Num of repeats: 13 Spacers: s14-s25 CRISPR array Location: 1591514-1592338 bp Num of repeats: 13 Spacers: s14-s25 CRISPR array Location: 1702658-1704467 bp Num of repeats: 28 Spacers: s26-s52 CRISPR array Location: 1702658-1704467 bp Num of repeats: 28 Spacers: s26-s52 CRISPR array Location: 1785077-1785367 bp Num of repeats: 5 Spacers: s53-s56 CRISPR array Location: 1785077-1785367 bp Num of repeats: 5 Spacers: s53-s56 CRISPR array Location: 1920490-1921825 bp Num of repeats: 21 Spacers: s57-s76 CRISPR array Location: 1920490-1921825 bp Num of repeats: 21 Spacers: s57-s76 CRISPR array Location: 2239699-2239989 bp Num of repeats: 5 Spacers: s77-s80 CRISPR array Location: 2239699-2239989 bp Num of repeats: 5 Spacers: s77-s80 CRISPR array Location: 2612791-2613342 bp Num of repeats: 9 Spacers: s81-s88 CRISPR array Location: 2612791-2613342 bp Num of repeats: 9 Spacers: s81-s88 Gene: cd09641:cas3HD Type: Type-I Location: 2776762-2779170 bp Gene: cd09693:cas5 Type: Type-I Location: 2779197-2779994 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2780010-2781026 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 2781046-2782521 bp Gene: pfam01881:cas6 Type: other Location: 2782526-2783263 bp Gene: unk Type: unknown Location: 2783364-2783540 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 2783999-2785108 bp CRISPR array Location: 2858391-2858886 bp Num of repeats: 8 Spacers: s89-s95 CRISPR array Location: 2858391-2858886 bp Num of repeats: 8 Spacers: s89-s95 CRISPR array Location: 3378337-3378694 bp Num of repeats: 6 Spacers: s96-s100 CRISPR array Location: 3378337-3378694 bp Num of repeats: 6 Spacers: s96-s100 Gene: cd09725:cas2 Type: universal Location: 3378878-3379144 bp Gene: cd09722:cas1 Type: universal Location: 3379147-3380127 bp Gene: pfam01930:cas4 Type: Type-I Location: 3380130-3380648 bp Gene: cd09641:cas3HD Type: Type-I Location: 3380696-3383017 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 3383028-3383729 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 3383731-3384645 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 3384647-3386524 bp Gene: pfam01881:cas6 Type: other Location: 3386530-3387324 bp Gene: pfam13280:WYL Type: other Location: 3387345-3388259 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 301042-301264 bp]: array | spacers
           [Locus range 302968-303654 bp]: array | spacers
           [Locus range 1591514-1592338 bp]: array | spacers
           [Locus range 1702658-1704467 bp]: array | spacers
           [Locus range 1785077-1785367 bp]: array | spacers
           [Locus range 1920490-1921825 bp]: array | spacers
           [Locus range 2239699-2239989 bp]: array | spacers
           [Locus range 2612791-2613342 bp]: array | spacers
           [Locus range 2858391-2858886 bp]: array | spacers
           [Locus range 3378337-3378694 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)