CRISPRone

CRISPRone report for GCA_006454575.1_ASM645457v1

♦ Seq 1: PZOW01000002.1 Clostridioides difficile strain 20911 u00000crpx_c_020911, whole genome shotgun sequence

⇒Summary: seq-len = 4132089 bp; # of CRISPR array = 9; # of cas gene = 15  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1307429-1307788 bp 2 Locus 2: 1515894-1516189 bp 3 Locus 3: 1626510-1627600 bp 4 Locus 4: 1803008-1804027 bp 5 Locus 5: 2121881-2122040 bp 6 Locus 6: 2172948-2174354 bp 7 Locus 7: 2523483-2524497 bp 8 Locus 8: 2686470-2694335 bp 9 Locus 9: 2767601-2768158 bp 10 Locus 10: 3271546-3282781 bp Zoom in on locus 1 x6 Zoom in on locus 2 x5 Zoom in on locus 3 x17 Zoom in on locus 4 x16 Zoom in on locus 5 x3 Zoom in on locus 6 x22 Zoom in on locus 7 x16 Zoom in on locus 8 Zoom in on locus 9 x9 Zoom in on locus 10 x26 CRISPR array Location: 1307429-1307788 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 1307429-1307788 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 1515894-1516189 bp Num of repeats: 5 Spacers: s6-s9 CRISPR array Location: 1515894-1516189 bp Num of repeats: 5 Spacers: s6-s9 CRISPR array Location: 1626510-1627600 bp Num of repeats: 17 Spacers: s10-s25 CRISPR array Location: 1626510-1627600 bp Num of repeats: 17 Spacers: s10-s25 CRISPR array Location: 1803008-1804027 bp Num of repeats: 16 Spacers: s26-s40 CRISPR array Location: 1803008-1804027 bp Num of repeats: 16 Spacers: s26-s40 CRISPR array Location: 2121881-2122040 bp Num of repeats: 3 Spacers: s41-s42 CRISPR array Location: 2121881-2122040 bp Num of repeats: 3 Spacers: s41-s42 CRISPR array Location: 2172948-2174354 bp Num of repeats: 22 Spacers: s43-s63 CRISPR array Location: 2172948-2174354 bp Num of repeats: 22 Spacers: s43-s63 CRISPR array Location: 2523483-2524497 bp Num of repeats: 16 Spacers: s64-s78 CRISPR array Location: 2523483-2524497 bp Num of repeats: 16 Spacers: s64-s78 Gene: cd09641:cas3HD Type: Type-I Location: 2686470-2688878 bp Gene: cd09693:cas5 Type: Type-I Location: 2688905-2689702 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2689718-2690731 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 2690751-2692226 bp Gene: pfam01881:cas6 Type: other Location: 2692231-2692968 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 2693226-2694335 bp CRISPR array Location: 2767601-2768158 bp Num of repeats: 9 Spacers: s79-s86 CRISPR array Location: 2767601-2768158 bp Num of repeats: 9 Spacers: s79-s86 CRISPR array Location: 3271546-3273216 bp Num of repeats: 26 Spacers: s87-s111 CRISPR array Location: 3271546-3273216 bp Num of repeats: 26 Spacers: s87-s111 Gene: cd09725:cas2 Type: universal Location: 3273400-3273666 bp Gene: cd09722:cas1 Type: universal Location: 3273669-3274649 bp Gene: pfam01930:cas4 Type: Type-I Location: 3274652-3275170 bp Gene: COG1203:cas3 Type: Type-I Location: 3275218-3277539 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 3277550-3278251 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 3278253-3279167 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 3279169-3281046 bp Gene: pfam01881:cas6 Type: other Location: 3281052-3281846 bp Gene: pfam13280:WYL Type: other Location: 3281867-3282781 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1307429-1307788 bp]: array | spacers
           [Locus range 1515894-1516189 bp]: array | spacers
           [Locus range 1626510-1627600 bp]: array | spacers
           [Locus range 1803008-1804027 bp]: array | spacers
           [Locus range 2121881-2122040 bp]: array | spacers
           [Locus range 2172948-2174354 bp]: array | spacers
           [Locus range 2523483-2524497 bp]: array | spacers
           [Locus range 2767601-2768158 bp]: array | spacers
           [Locus range 3271546-3273216 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)