CRISPRone

CRISPRone report for GCA_006802095.1_ASM680209v1

♦ Seq 1: SDVY01000011.1 Pseudomonas aeruginosa strain GOM1 scaffold_13, whole genome shotgun sequence

⇒Summary: seq-len = 324092 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 104440-115503 bp Zoom in on locus 1 x12 x19 CRISPR array Location: 104440-105142 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 104440-105142 bp Num of repeats: 12 Spacers: s1-s11 Gene: cd09641:cas3HD Type: Type-I Location: 105917-108598 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 108601-110169 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 110166-110696 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 110706-111848 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 111850-112512 bp Gene: pfam08798:cas6e Type: other Location: 112487-113098 bp Gene: cd09719:cas1 Type: universal Location: 113125-114015 bp Gene: pfam09707:cas2 Type: universal Location: 114012-114311 bp CRISPR array Location: 114376-115503 bp Num of repeats: 19 Spacers: s12-s29 CRISPR array Location: 114376-115503 bp Num of repeats: 19 Spacers: s12-s29 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 104440-105142 bp]: array | spacers
           [Locus range 114376-115503 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: SDVY01000064.1 Pseudomonas aeruginosa strain GOM1 scaffold_32, whole genome shotgun sequence

⇒Summary: seq-len = 163420 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 47919-58981 bp Zoom in on locus 1 x19 x12 CRISPR array Location: 47919-49045 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 47919-49045 bp Num of repeats: 19 Spacers: s1-s18 Gene: pfam09707:cas2 Type: universal Location: 49110-49409 bp Gene: cd09719:cas1 Type: universal Location: 49406-50296 bp Gene: pfam08798:cas6e Type: other Location: 50323-50862 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 50909-51571 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 51573-52715 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 52725-53255 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 53252-54820 bp Gene: cd09641:cas3HD Type: Type-I Location: 54823-57504 bp CRISPR array Location: 58280-58981 bp Num of repeats: 12 Spacers: s19-s29 CRISPR array Location: 58280-58981 bp Num of repeats: 12 Spacers: s19-s29 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 47919-49045 bp]: array | spacers
           [Locus range 58280-58981 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)