CRISPRone

CRISPRone report for GCA_006864505.1_ASM686450v1

♦ Seq 1: QJGX01000013.1 Pseudomonas aeruginosa strain EPIC E197 NODE_13_length_210119_cov_186.129, whole genome shotgun sequence

⇒Summary: seq-len = 210119 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 208749-209855 bp Zoom in on locus 1 x19 CRISPR array Location: 208749-209855 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 208749-209855 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 208749-209855 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: QJGX01000011.1 Pseudomonas aeruginosa strain EPIC E197 NODE_11_length_229713_cov_181.892, whole genome shotgun sequence

⇒Summary: seq-len = 229713 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 180917-191525 bp Zoom in on locus 1 x12 x17 CRISPR array Location: 180917-181605 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 180917-181605 bp Num of repeats: 12 Spacers: s1-s11 Gene: cd09718:cas1 Type: universal Location: 181865-182839 bp Gene: COG1203:cas3 Type: Type-I Location: 182836-186066 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 186477-187778 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 187765-188748 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 188759-189787 bp Gene: cd09739:cas6f Type: other Location: 189791-190354 bp CRISPR array Location: 190538-191525 bp Num of repeats: 17 Spacers: s12-s27 CRISPR array Location: 190538-191525 bp Num of repeats: 17 Spacers: s12-s27 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 180917-181605 bp]: array | spacers
           [Locus range 190538-191525 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)