CRISPRone

CRISPRone report for GCA_006971785.1_ASM697178v1

♦ Seq 1: CP041354.1 Pseudomonas aeruginosa strain AZPAE15042 chromosome, complete genome

⇒Summary: seq-len = 6527298 bp; # of CRISPR array = 3; # of cas gene = 18  (type I, IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1039718-1050303 bp 2 Locus 2: 1108709-1109338 bp 3 Locus 3: 2484309-2496902 bp 4 Locus 4: 2905320-2914995 bp 5 Locus 5: 3960858-3963060 bp 6 Locus 6: 6162173-6170434 bp Zoom in on locus 1 Zoom in on locus 2 x11 Zoom in on locus 3 Zoom in on locus 4 x9 x10 Zoom in on locus 5 Zoom in on locus 6 Gene: COG0640:csa3 Type: Subtype-I-A Location: 1039718-1040587 bp Gene: pfam00078:RT Type: other Location: 1045496-1046764 bp Gene: unk Type: unknown Location: 1046914-1047312 bp Gene: unk Type: unknown Location: 1047496-1047675 bp Gene: cls000170:cas4 Type: Type-I Location: 1048759-1050303 bp CRISPR array Location: 1108709-1109338 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 1108709-1109338 bp Num of repeats: 11 Spacers: s1-s10 Gene: COG0640:csa3 Type: Subtype-I-A Location: 2484309-2484611 bp Gene: cd09641:cas3HD Type: Type-I Location: 2493873-2495669 bp Gene: unk Type: unknown Location: 2495861-2496283 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 2496597-2496902 bp CRISPR array Location: 2905320-2905828 bp Num of repeats: 9 Spacers: s11-s18 CRISPR array Location: 2905320-2905828 bp Num of repeats: 9 Spacers: s11-s18 Gene: cd09739:cas6f Type: other Location: 2906001-2906564 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 2906568-2907596 bp Gene: pfam09614:cas5f Type: Subtype-I-F Location: 2907607-2908590 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 2908577-2909881 bp Gene: COG1203:cas3 Type: Type-I Location: 2909939-2913175 bp Gene: cd09718:cas1 Type: universal Location: 2913172-2914146 bp CRISPR array Location: 2914427-2914995 bp Num of repeats: 10 Spacers: s19-s27 CRISPR array Location: 2914427-2914995 bp Num of repeats: 10 Spacers: s19-s27 Gene: COG2378:WYL Type: other Location: 3960858-3961829 bp Gene: unk Type: unknown Location: 3961939-3962625 bp Gene: cd09693:cas5 Type: Type-I Location: 3962653-3963060 bp Gene: COG1199:DinG Type: Subtype-IV-A Location: 6162173-6164539 bp Gene: unk Type: unknown Location: 6164932-6165510 bp Gene: unk Type: unknown Location: 6165654-6165809 bp Gene: COG2378:WYL Type: other Location: 6166063-6166905 bp Gene: pfam13280:WYL Type: other Location: 6167893-6168663 bp Gene: mkCas0115:csx3 Type: other Location: 6168824-6170434 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1108709-1109338 bp]: array | spacers
           [Locus range 2905320-2905828 bp]: array | spacers
           [Locus range 2914427-2914995 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)