CRISPRone

CRISPRone report for GCA_007000285.1_ASM700028v1

♦ Seq 1: SERP01000013.1 Clostridioides difficile strain LC5-008-7 NODE_13_length_99542_cov_28.8206, whole genome shotgun sequence

⇒Summary: seq-len = 99542 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18337-18825 bp Zoom in on locus 1 x8 CRISPR array Location: 18337-18825 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 18337-18825 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18337-18825 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: SERP01000002.1 Clostridioides difficile strain LC5-008-7 NODE_2_length_422963_cov_34.3651, whole genome shotgun sequence

⇒Summary: seq-len = 422963 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 256300-267431 bp Zoom in on locus 1 x23 CRISPR array Location: 256300-257772 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 256300-257772 bp Num of repeats: 23 Spacers: s1-s22 Gene: cd09725:cas2 Type: universal Location: 258077-258343 bp Gene: cd09722:cas1 Type: universal Location: 258346-259326 bp Gene: pfam01930:cas4 Type: Type-I Location: 259329-259847 bp Gene: COG1203:cas3 Type: Type-I Location: 259895-262216 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 262227-262928 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 262930-263844 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 263846-265696 bp Gene: pfam01881:cas6 Type: other Location: 265702-266496 bp Gene: pfam13280:WYL Type: other Location: 266517-267431 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 256300-257772 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: SERP01000004.1 Clostridioides difficile strain LC5-008-7 NODE_4_length_277552_cov_33.1169, whole genome shotgun sequence

⇒Summary: seq-len = 277552 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 86106-87119 bp Zoom in on locus 1 x16 CRISPR array Location: 86106-87119 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 86106-87119 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 86106-87119 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: SERP01000001.1 Clostridioides difficile strain LC5-008-7 NODE_1_length_1090643_cov_30.5014, whole genome shotgun sequence

⇒Summary: seq-len = 1090643 bp; # of CRISPR array = 3; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 252436-252530 bp 2 Locus 2: 606089-606643 bp 3 Locus 3: 769183-777048 bp 4 Locus 4: 850328-850487 bp Zoom in on locus 1 x2 Zoom in on locus 2 x9 Zoom in on locus 3 Zoom in on locus 4 x3 CRISPR array Location: 252436-252530 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 252436-252530 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 606089-606643 bp Num of repeats: 9 Spacers: s2-s9 CRISPR array Location: 606089-606643 bp Num of repeats: 9 Spacers: s2-s9 Gene: cd09641:cas3HD Type: Type-I Location: 769183-771591 bp Gene: cd09693:cas5 Type: Type-I Location: 771618-772415 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 772431-773444 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 773464-774939 bp Gene: pfam01881:cas6 Type: other Location: 774944-775681 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 775939-777048 bp CRISPR array Location: 850328-850487 bp Num of repeats: 3 Spacers: s10-s11 CRISPR array Location: 850328-850487 bp Num of repeats: 3 Spacers: s10-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 252436-252530 bp]: array | spacers
           [Locus range 606089-606643 bp]: array | spacers
           [Locus range 850328-850487 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: SERP01000024.1 Clostridioides difficile strain LC5-008-7 NODE_24_length_11527_cov_31.3496, whole genome shotgun sequence

⇒Summary: seq-len = 11527 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2650-5705 bp Zoom in on locus 1 x4 x3 CRISPR array Location: 2650-2877 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 2650-2877 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 5544-5705 bp Num of repeats: 3 Spacers: s4-s5 CRISPR array Location: 5544-5705 bp Num of repeats: 3 Spacers: s4-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2650-2877 bp]: array | spacers
           [Locus range 5544-5705 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: SERP01000015.1 Clostridioides difficile strain LC5-008-7 NODE_15_length_62627_cov_27.8645, whole genome shotgun sequence

⇒Summary: seq-len = 62627 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 56720-58326 bp Zoom in on locus 1 x25 CRISPR array Location: 56720-58326 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 56720-58326 bp Num of repeats: 25 Spacers: s1-s24 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 56720-58326 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: SERP01000007.1 Clostridioides difficile strain LC5-008-7 NODE_7_length_203641_cov_30.2228, whole genome shotgun sequence

⇒Summary: seq-len = 203641 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 111416-112305 bp Zoom in on locus 1 x14 CRISPR array Location: 111416-112305 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 111416-112305 bp Num of repeats: 14 Spacers: s1-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 111416-112305 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)