CRISPRone

CRISPRone report for GCA_007000395.1_ASM700039v1

♦ Seq 1: SERM01000005.1 Clostridioides difficile strain LC5-008-4 NODE_5_length_266046_cov_18.8561, whole genome shotgun sequence

⇒Summary: seq-len = 266046 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4042-5649 bp 2 Locus 2: 173983-174872 bp Zoom in on locus 1 x25 Zoom in on locus 2 x14 CRISPR array Location: 4042-5649 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 4042-5649 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 173983-174872 bp Num of repeats: 14 Spacers: s25-s37 CRISPR array Location: 173983-174872 bp Num of repeats: 14 Spacers: s25-s37 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4042-5649 bp]: array | spacers
           [Locus range 173983-174872 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: SERM01000002.1 Clostridioides difficile strain LC5-008-4 NODE_2_length_418098_cov_18.2574, whole genome shotgun sequence

⇒Summary: seq-len = 418098 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 252303-252397 bp Zoom in on locus 1 x2 CRISPR array Location: 252303-252397 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 252303-252397 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 252303-252397 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: SERM01000024.1 Clostridioides difficile strain LC5-008-4 NODE_24_length_11527_cov_24.1005, whole genome shotgun sequence

⇒Summary: seq-len = 11527 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2650-5705 bp Zoom in on locus 1 x4 x3 CRISPR array Location: 2650-2877 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 2650-2877 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 5544-5705 bp Num of repeats: 3 Spacers: s4-s5 CRISPR array Location: 5544-5705 bp Num of repeats: 3 Spacers: s4-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2650-2877 bp]: array | spacers
           [Locus range 5544-5705 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: SERM01000001.1 Clostridioides difficile strain LC5-008-4 NODE_1_length_671813_cov_20.6623, whole genome shotgun sequence

⇒Summary: seq-len = 671813 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 239542-239702 bp 2 Locus 2: 312981-320846 bp 3 Locus 3: 483386-483941 bp Zoom in on locus 1 x3 Zoom in on locus 2 Zoom in on locus 3 x9 CRISPR array Location: 239542-239702 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 239542-239702 bp Num of repeats: 3 Spacers: s1-s2 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 312981-314090 bp Gene: pfam01881:cas6 Type: other Location: 314348-315085 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 315090-316565 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 316585-317598 bp Gene: cd09693:cas5 Type: Type-I Location: 317614-318411 bp Gene: cd09641:cas3HD Type: Type-I Location: 318438-320846 bp CRISPR array Location: 483386-483941 bp Num of repeats: 9 Spacers: s3-s10 CRISPR array Location: 483386-483941 bp Num of repeats: 9 Spacers: s3-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 239542-239702 bp]: array | spacers
           [Locus range 483386-483941 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: SERM01000003.1 Clostridioides difficile strain LC5-008-4 NODE_3_length_334429_cov_20.5989, whole genome shotgun sequence

⇒Summary: seq-len = 334429 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 66999-78131 bp Zoom in on locus 1 x23 Gene: pfam13280:WYL Type: other Location: 66999-67913 bp Gene: pfam01881:cas6 Type: other Location: 67991-68728 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 68734-70584 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 70586-71500 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 71502-72203 bp Gene: COG1203:cas3 Type: Type-I Location: 72214-74535 bp Gene: pfam01930:cas4 Type: Type-I Location: 74550-75101 bp Gene: cd09722:cas1 Type: universal Location: 75104-76084 bp Gene: cd09725:cas2 Type: universal Location: 76087-76353 bp CRISPR array Location: 76658-78131 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 76658-78131 bp Num of repeats: 23 Spacers: s1-s22 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 76658-78131 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: SERM01000004.1 Clostridioides difficile strain LC5-008-4 NODE_4_length_277644_cov_20.7208, whole genome shotgun sequence

⇒Summary: seq-len = 277644 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 190361-191375 bp Zoom in on locus 1 x16 CRISPR array Location: 190361-191375 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 190361-191375 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 190361-191375 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: SERM01000016.1 Clostridioides difficile strain LC5-008-4 NODE_16_length_100182_cov_18.3855, whole genome shotgun sequence

⇒Summary: seq-len = 100182 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18977-19465 bp Zoom in on locus 1 x8 CRISPR array Location: 18977-19465 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 18977-19465 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18977-19465 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)