CRISPRone

CRISPRone report for GCA_007000425.1_ASM700042v1

♦ Seq 1: SERO01000015.1 Clostridioides difficile strain LC5-008-6 NODE_15_length_99520_cov_18.5187, whole genome shotgun sequence

⇒Summary: seq-len = 99520 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18315-18803 bp Zoom in on locus 1 x8 CRISPR array Location: 18315-18803 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 18315-18803 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18315-18803 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: SERO01000003.1 Clostridioides difficile strain LC5-008-6 NODE_3_length_310120_cov_17.9686, whole genome shotgun sequence

⇒Summary: seq-len = 310120 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 252436-252530 bp Zoom in on locus 1 x2 CRISPR array Location: 252436-252530 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 252436-252530 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 252436-252530 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: SERO01000004.1 Clostridioides difficile strain LC5-008-6 NODE_4_length_277512_cov_20.801, whole genome shotgun sequence

⇒Summary: seq-len = 277512 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 190361-191375 bp Zoom in on locus 1 x16 CRISPR array Location: 190361-191375 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 190361-191375 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 190361-191375 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: SERO01000019.1 Clostridioides difficile strain LC5-008-6 NODE_19_length_62592_cov_18.9762, whole genome shotgun sequence

⇒Summary: seq-len = 62592 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 56753-58359 bp Zoom in on locus 1 x25 CRISPR array Location: 56753-58359 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 56753-58359 bp Num of repeats: 25 Spacers: s1-s24 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 56753-58359 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: SERO01000002.1 Clostridioides difficile strain LC5-008-6 NODE_2_length_422963_cov_21.1442, whole genome shotgun sequence

⇒Summary: seq-len = 422963 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 256300-267431 bp Zoom in on locus 1 x23 CRISPR array Location: 256300-257772 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 256300-257772 bp Num of repeats: 23 Spacers: s1-s22 Gene: cd09725:cas2 Type: universal Location: 258077-258343 bp Gene: cd09722:cas1 Type: universal Location: 258346-259326 bp Gene: pfam01930:cas4 Type: Type-I Location: 259329-259847 bp Gene: COG1203:cas3 Type: Type-I Location: 259895-262216 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 262227-262928 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 262930-263844 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 263846-265696 bp Gene: pfam01881:cas6 Type: other Location: 265702-266496 bp Gene: pfam13280:WYL Type: other Location: 266517-267431 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 256300-257772 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: SERO01000026.1 Clostridioides difficile strain LC5-008-6 NODE_26_length_11527_cov_24.9811, whole genome shotgun sequence

⇒Summary: seq-len = 11527 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2650-5705 bp Zoom in on locus 1 x4 x3 CRISPR array Location: 2650-2877 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 2650-2877 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 5544-5705 bp Num of repeats: 3 Spacers: s4-s5 CRISPR array Location: 5544-5705 bp Num of repeats: 3 Spacers: s4-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2650-2877 bp]: array | spacers
           [Locus range 5544-5705 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: SERO01000006.1 Clostridioides difficile strain LC5-008-6 NODE_6_length_203347_cov_19.0723, whole genome shotgun sequence

⇒Summary: seq-len = 203347 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 91044-91932 bp Zoom in on locus 1 x14 CRISPR array Location: 91044-91932 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 91044-91932 bp Num of repeats: 14 Spacers: s1-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 91044-91932 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: SERO01000001.1 Clostridioides difficile strain LC5-008-6 NODE_1_length_733266_cov_20.6864, whole genome shotgun sequence

⇒Summary: seq-len = 733266 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 239542-239702 bp 2 Locus 2: 312981-320846 bp 3 Locus 3: 483386-483941 bp Zoom in on locus 1 x3 Zoom in on locus 2 Zoom in on locus 3 x9 CRISPR array Location: 239542-239702 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 239542-239702 bp Num of repeats: 3 Spacers: s1-s2 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 312981-314090 bp Gene: pfam01881:cas6 Type: other Location: 314348-315085 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 315090-316565 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 316585-317598 bp Gene: cd09693:cas5 Type: Type-I Location: 317614-318411 bp Gene: cd09641:cas3HD Type: Type-I Location: 318438-320846 bp CRISPR array Location: 483386-483941 bp Num of repeats: 9 Spacers: s3-s10 CRISPR array Location: 483386-483941 bp Num of repeats: 9 Spacers: s3-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 239542-239702 bp]: array | spacers
           [Locus range 483386-483941 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)