CRISPRone

CRISPRone report for GCA_007000575.1_ASM700057v1

♦ Seq 1: SERE01000008.1 Clostridioides difficile strain LC4-013-3 NODE_8_length_211645_cov_49.1658, whole genome shotgun sequence

⇒Summary: seq-len = 211645 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 120310-120737 bp Zoom in on locus 1 x7 CRISPR array Location: 120310-120737 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 120310-120737 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 120310-120737 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: SERE01000013.1 Clostridioides difficile strain LC4-013-3 NODE_13_length_94106_cov_49.4821, whole genome shotgun sequence

⇒Summary: seq-len = 94106 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 35530-36678 bp Zoom in on locus 1 x18 CRISPR array Location: 35530-36678 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 35530-36678 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 35530-36678 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: SERE01000006.1 Clostridioides difficile strain LC4-013-3 NODE_6_length_232017_cov_48.7049, whole genome shotgun sequence

⇒Summary: seq-len = 232017 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 120897-123811 bp 2 Locus 2: 213728-214219 bp Zoom in on locus 1 x5 x15 Zoom in on locus 2 x8 CRISPR array Location: 120897-121188 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 120897-121188 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 122841-123811 bp Num of repeats: 15 Spacers: s5-s18 CRISPR array Location: 122841-123811 bp Num of repeats: 15 Spacers: s5-s18 CRISPR array Location: 213728-214219 bp Num of repeats: 8 Spacers: s19-s25 CRISPR array Location: 213728-214219 bp Num of repeats: 8 Spacers: s19-s25 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 120897-121188 bp]: array | spacers
           [Locus range 122841-123811 bp]: array | spacers
           [Locus range 213728-214219 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: SERE01000016.1 Clostridioides difficile strain LC4-013-3 NODE_16_length_61608_cov_48.8337, whole genome shotgun sequence

⇒Summary: seq-len = 61608 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 46334-47608 bp Zoom in on locus 1 x20 CRISPR array Location: 46334-47608 bp Num of repeats: 20 Spacers: s1-s19 CRISPR array Location: 46334-47608 bp Num of repeats: 20 Spacers: s1-s19 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 46334-47608 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: SERE01000001.1 Clostridioides difficile strain LC4-013-3 NODE_1_length_731342_cov_51.0368, whole genome shotgun sequence

⇒Summary: seq-len = 731342 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 251454-252406 bp 2 Locus 2: 414371-422236 bp 3 Locus 3: 495503-495858 bp Zoom in on locus 1 x15 Zoom in on locus 2 Zoom in on locus 3 x6 CRISPR array Location: 251454-252406 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 251454-252406 bp Num of repeats: 15 Spacers: s1-s14 Gene: cd09641:cas3HD Type: Type-I Location: 414371-416779 bp Gene: cd09693:cas5 Type: Type-I Location: 416806-417603 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 417619-418632 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 418652-420127 bp Gene: pfam01881:cas6 Type: other Location: 420132-420869 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 421127-422236 bp CRISPR array Location: 495503-495858 bp Num of repeats: 6 Spacers: s15-s19 CRISPR array Location: 495503-495858 bp Num of repeats: 6 Spacers: s15-s19 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 251454-252406 bp]: array | spacers
           [Locus range 495503-495858 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)