CRISPRone

CRISPRone report for GCA_007000585.1_ASM700058v1

♦ Seq 1: SERD01000005.1 Clostridioides difficile strain LC4-013-2 NODE_5_length_184195_cov_42.3527, whole genome shotgun sequence

⇒Summary: seq-len = 184195 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 63460-63886 bp Zoom in on locus 1 x7 CRISPR array Location: 63460-63886 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 63460-63886 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 63460-63886 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: SERD01000032.1 Clostridioides difficile strain LC4-013-2 NODE_32_length_31052_cov_44.4299, whole genome shotgun sequence

⇒Summary: seq-len = 31052 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3340-3695 bp Zoom in on locus 1 x6 CRISPR array Location: 3340-3695 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 3340-3695 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3340-3695 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: SERD01000036.1 Clostridioides difficile strain LC4-013-2 NODE_36_length_28442_cov_36.9982, whole genome shotgun sequence

⇒Summary: seq-len = 28442 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 10153-10644 bp Zoom in on locus 1 x8 CRISPR array Location: 10153-10644 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 10153-10644 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 10153-10644 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: SERD01000019.1 Clostridioides difficile strain LC4-013-2 NODE_19_length_82819_cov_41.5144, whole genome shotgun sequence

⇒Summary: seq-len = 82819 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 57811-58958 bp Zoom in on locus 1 x18 CRISPR array Location: 57811-58958 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 57811-58958 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 57811-58958 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: SERD01000004.1 Clostridioides difficile strain LC4-013-2 NODE_4_length_198055_cov_41.6993, whole genome shotgun sequence

⇒Summary: seq-len = 198055 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 115647-118561 bp Zoom in on locus 1 x5 x15 CRISPR array Location: 115647-115938 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 115647-115938 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 117591-118561 bp Num of repeats: 15 Spacers: s5-s18 CRISPR array Location: 117591-118561 bp Num of repeats: 15 Spacers: s5-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 115647-115938 bp]: array | spacers
           [Locus range 117591-118561 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: SERD01000010.1 Clostridioides difficile strain LC4-013-2 NODE_10_length_142275_cov_43.5893, whole genome shotgun sequence

⇒Summary: seq-len = 142275 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 59355-67220 bp Zoom in on locus 1 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 59355-60464 bp Gene: pfam01881:cas6 Type: other Location: 60722-61459 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 61464-62939 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 62959-63972 bp Gene: cd09693:cas5 Type: Type-I Location: 63988-64785 bp Gene: cd09641:cas3HD Type: Type-I Location: 64812-67220 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: SERD01000025.1 Clostridioides difficile strain LC4-013-2 NODE_25_length_56248_cov_40.6141, whole genome shotgun sequence

⇒Summary: seq-len = 56248 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 41026-42300 bp Zoom in on locus 1 x20 CRISPR array Location: 41026-42300 bp Num of repeats: 20 Spacers: s1-s19 CRISPR array Location: 41026-42300 bp Num of repeats: 20 Spacers: s1-s19 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 41026-42300 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: SERD01000001.1 Clostridioides difficile strain LC4-013-2 NODE_1_length_333661_cov_42.014, whole genome shotgun sequence

⇒Summary: seq-len = 333661 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 81256-82209 bp Zoom in on locus 1 x15 CRISPR array Location: 81256-82209 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 81256-82209 bp Num of repeats: 15 Spacers: s1-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 81256-82209 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)