CRISPRone

CRISPRone report for GCA_007000635.1_ASM700063v1

♦ Seq 1: QWUE01000031.1 Clostridioides difficile strain LC1-4-1231 NODE_31_length_23817_cov_3.29751, whole genome shotgun sequence

⇒Summary: seq-len = 23817 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5042-6255 bp Zoom in on locus 1 x19 CRISPR array Location: 5042-6255 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 5042-6255 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5042-6255 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: QWUE01000111.1 Clostridioides difficile strain LC1-4-1231 NODE_111_length_11360_cov_3.65619, whole genome shotgun sequence

⇒Summary: seq-len = 11360 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 336-1223 bp Zoom in on locus 1 x14 CRISPR array Location: 336-1223 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 336-1223 bp Num of repeats: 14 Spacers: s1-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 336-1223 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: QWUE01000125.1 Clostridioides difficile strain LC1-4-1231 NODE_125_length_10757_cov_3.1397, whole genome shotgun sequence

⇒Summary: seq-len = 10757 bp; # of CRISPR array = 1; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3-10028 bp Zoom in on locus 1 x27 Gene: pfam01881:cas6 Type: other Location: 3-479 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 485-2335 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2337-3251 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 3253-3954 bp Gene: COG1203:cas3 Type: Type-I Location: 3965-6286 bp Gene: pfam01930:cas4 Type: Type-I Location: 6301-6852 bp Gene: cd09722:cas1 Type: universal Location: 6855-7835 bp Gene: cd09725:cas2 Type: universal Location: 7838-8104 bp CRISPR array Location: 8288-10028 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 8288-10028 bp Num of repeats: 27 Spacers: s1-s26 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 8288-10028 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: QWUE01000013.1 Clostridioides difficile strain LC1-4-1231 NODE_13_length_40256_cov_4.30247, whole genome shotgun sequence

⇒Summary: seq-len = 40256 bp; # of CRISPR array = 0; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 33717-40214 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 33717-36125 bp Gene: cd09693:cas5 Type: Type-I Location: 36152-36958 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 36974-37987 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 38006-39472 bp Gene: pfam01881:cas6 Type: other Location: 39477-40214 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: QWUE01000038.1 Clostridioides difficile strain LC1-4-1231 NODE_38_length_22161_cov_4.44105, whole genome shotgun sequence

⇒Summary: seq-len = 22161 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 14-174 bp Zoom in on locus 1 x3 CRISPR array Location: 14-174 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 14-174 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 14-174 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: QWUE01000212.1 Clostridioides difficile strain LC1-4-1231 NODE_212_length_6740_cov_3.63239, whole genome shotgun sequence

⇒Summary: seq-len = 6740 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2924-3680 bp Zoom in on locus 1 x12 CRISPR array Location: 2924-3680 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 2924-3680 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2924-3680 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: QWUE01000261.1 Clostridioides difficile strain LC1-4-1231 NODE_261_length_4932_cov_3.41145, whole genome shotgun sequence

⇒Summary: seq-len = 4932 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4104-4928 bp Zoom in on locus 1 x13 CRISPR array Location: 4104-4928 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 4104-4928 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4104-4928 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: QWUE01000006.1 Clostridioides difficile strain LC1-4-1231 NODE_6_length_46231_cov_4.57704, whole genome shotgun sequence

⇒Summary: seq-len = 46231 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 13109-14562 bp Zoom in on locus 1 x7 x7 CRISPR array Location: 13109-13532 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 13109-13532 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 14136-14562 bp Num of repeats: 7 Spacers: s7-s12 CRISPR array Location: 14136-14562 bp Num of repeats: 7 Spacers: s7-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 13109-13532 bp]: array | spacers
           [Locus range 14136-14562 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: QWUE01000041.1 Clostridioides difficile strain LC1-4-1231 NODE_41_length_20970_cov_3.83899, whole genome shotgun sequence

⇒Summary: seq-len = 20970 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18580-19073 bp Zoom in on locus 1 x8 CRISPR array Location: 18580-19073 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 18580-19073 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18580-19073 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: QWUE01000254.1 Clostridioides difficile strain LC1-4-1231 NODE_254_length_5164_cov_2.38217, whole genome shotgun sequence

⇒Summary: seq-len = 5164 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1543-1705 bp Zoom in on locus 1 x3 CRISPR array Location: 1543-1705 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 1543-1705 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1543-1705 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)