CRISPRone

CRISPRone report for GCA_007001125.1_ASM700112v1

♦ Seq 1: QWVB01000008.1 Clostridioides difficile strain LC1-18-0803 NODE_8_length_199976_cov_40.6067, whole genome shotgun sequence

⇒Summary: seq-len = 199976 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 107670-109088 bp Zoom in on locus 1 x22 CRISPR array Location: 107670-109088 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 107670-109088 bp Num of repeats: 22 Spacers: s1-s21 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 107670-109088 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: QWVB01000010.1 Clostridioides difficile strain LC1-18-0803 NODE_10_length_138883_cov_39.8587, whole genome shotgun sequence

⇒Summary: seq-len = 138883 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 40057-40150 bp 2 Locus 2: 120381-121069 bp Zoom in on locus 1 x2 Zoom in on locus 2 x11 CRISPR array Location: 40057-40150 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 40057-40150 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 120381-121069 bp Num of repeats: 11 Spacers: s2-s11 CRISPR array Location: 120381-121069 bp Num of repeats: 11 Spacers: s2-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 40057-40150 bp]: array | spacers
           [Locus range 120381-121069 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: QWVB01000003.1 Clostridioides difficile strain LC1-18-0803 NODE_3_length_431349_cov_50.2469, whole genome shotgun sequence

⇒Summary: seq-len = 431349 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 255655-266747 bp Zoom in on locus 1 x24 CRISPR array Location: 255655-257209 bp Num of repeats: 24 Spacers: s1-s23 CRISPR array Location: 255655-257209 bp Num of repeats: 24 Spacers: s1-s23 Gene: cd09725:cas2 Type: universal Location: 257393-257659 bp Gene: cd09722:cas1 Type: universal Location: 257662-258642 bp Gene: pfam01930:cas4 Type: Type-I Location: 258645-259163 bp Gene: COG1203:cas3 Type: Type-I Location: 259211-261532 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 261543-262244 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 262246-263160 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 263162-265012 bp Gene: pfam01881:cas6 Type: other Location: 265018-265812 bp Gene: pfam13280:WYL Type: other Location: 265833-266747 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 255655-257209 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: QWVB01000005.1 Clostridioides difficile strain LC1-18-0803 NODE_5_length_284204_cov_45.5569, whole genome shotgun sequence

⇒Summary: seq-len = 284204 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 185991-187005 bp Zoom in on locus 1 x16 CRISPR array Location: 185991-187005 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 185991-187005 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 185991-187005 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: QWVB01000002.1 Clostridioides difficile strain LC1-18-0803 NODE_2_length_524982_cov_37.8112, whole genome shotgun sequence

⇒Summary: seq-len = 524982 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 93275-93565 bp 2 Locus 2: 410892-413228 bp Zoom in on locus 1 x5 Zoom in on locus 2 x36 CRISPR array Location: 93275-93565 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 93275-93565 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 410892-413228 bp Num of repeats: 36 Spacers: s5-s39 CRISPR array Location: 410892-413228 bp Num of repeats: 36 Spacers: s5-s39 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 93275-93565 bp]: array | spacers
           [Locus range 410892-413228 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: QWVB01000001.1 Clostridioides difficile strain LC1-18-0803 NODE_1_length_736559_cov_43.0527, whole genome shotgun sequence

⇒Summary: seq-len = 736559 bp; # of CRISPR array = 1; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 303901-311766 bp 2 Locus 2: 477638-479243 bp Zoom in on locus 1 Zoom in on locus 2 x25 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 303901-305010 bp Gene: pfam01881:cas6 Type: other Location: 305268-306005 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 306010-307485 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 307505-308518 bp Gene: cd09693:cas5 Type: Type-I Location: 308534-309331 bp Gene: cd09641:cas3HD Type: Type-I Location: 309358-311766 bp CRISPR array Location: 477638-479243 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 477638-479243 bp Num of repeats: 25 Spacers: s1-s24 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 477638-479243 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)