CRISPRone

CRISPRone report for GCA_007001155.1_ASM700115v1

♦ Seq 1: QWVC01000484.1 Clostridioides difficile strain LC1-18-0607 NODE_484_length_2510_cov_3.66555, whole genome shotgun sequence

⇒Summary: seq-len = 2510 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 233-523 bp Zoom in on locus 1 x5 CRISPR array Location: 233-523 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 233-523 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 233-523 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: QWVC01000249.1 Clostridioides difficile strain LC1-18-0607 NODE_249_length_5566_cov_3.83085, whole genome shotgun sequence

⇒Summary: seq-len = 5566 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1367-2972 bp Zoom in on locus 1 x25 CRISPR array Location: 1367-2972 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 1367-2972 bp Num of repeats: 25 Spacers: s1-s24 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1367-2972 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: QWVC01000228.1 Clostridioides difficile strain LC1-18-0607 NODE_228_length_6140_cov_5.05804, whole genome shotgun sequence

⇒Summary: seq-len = 6140 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2-950 bp Zoom in on locus 1 x15 CRISPR array Location: 2-950 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 2-950 bp Num of repeats: 15 Spacers: s1-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2-950 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: QWVC01000718.1 Clostridioides difficile strain LC1-18-0607 NODE_718_length_848_cov_2.6061, whole genome shotgun sequence

⇒Summary: seq-len = 848 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8-102 bp Zoom in on locus 1 x2 CRISPR array Location: 8-102 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 8-102 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 8-102 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: QWVC01000222.1 Clostridioides difficile strain LC1-18-0607 NODE_222_length_6178_cov_3.93522, whole genome shotgun sequence

⇒Summary: seq-len = 6178 bp; # of CRISPR array = 1; # of cas gene = 4  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2-5322 bp Zoom in on locus 1 x24 Gene: COG1203:cas3 Type: Type-I Location: 2-1765 bp Gene: pfam01930:cas4 Type: Type-I Location: 1780-2331 bp Gene: cd09722:cas1 Type: universal Location: 2334-3314 bp Gene: cd09725:cas2 Type: universal Location: 3317-3583 bp CRISPR array Location: 3767-5322 bp Num of repeats: 24 Spacers: s1-s23 CRISPR array Location: 3767-5322 bp Num of repeats: 24 Spacers: s1-s23 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 3767-5322 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: QWVC01000392.1 Clostridioides difficile strain LC1-18-0607 NODE_392_length_3465_cov_3.84931, whole genome shotgun sequence

⇒Summary: seq-len = 3465 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2528-3217 bp Zoom in on locus 1 x11 CRISPR array Location: 2528-3217 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 2528-3217 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2528-3217 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: QWVC01000460.1 Clostridioides difficile strain LC1-18-0607 NODE_460_length_2736_cov_2.40974, whole genome shotgun sequence

⇒Summary: seq-len = 2736 bp; # of CRISPR array = 0; # of cas gene = 4  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2-2734 bp Zoom in on locus 1 Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 2-532 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 534-1448 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 1450-2151 bp Gene: cd09641:cas3HD Type: Type-I Location: 2162-2734 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: QWVC01000218.1 Clostridioides difficile strain LC1-18-0607 NODE_218_length_6220_cov_3.07747, whole genome shotgun sequence

⇒Summary: seq-len = 6220 bp; # of CRISPR array = 0; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 48-6219 bp Zoom in on locus 1 Gene: pfam01881:cas6 Type: other Location: 48-785 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 790-2265 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2285-3298 bp Gene: cd09693:cas5 Type: Type-I Location: 3314-4111 bp Gene: cd09641:cas3HD Type: Type-I Location: 4138-6219 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: QWVC01000009.1 Clostridioides difficile strain LC1-18-0607 NODE_9_length_23785_cov_7.63818, whole genome shotgun sequence

⇒Summary: seq-len = 23785 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 6089-6183 bp Zoom in on locus 1 x2 CRISPR array Location: 6089-6183 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 6089-6183 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 6089-6183 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: QWVC01000074.1 Clostridioides difficile strain LC1-18-0607 NODE_74_length_11356_cov_5.18906, whole genome shotgun sequence

⇒Summary: seq-len = 11356 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 7459-8877 bp Zoom in on locus 1 x22 CRISPR array Location: 7459-8877 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 7459-8877 bp Num of repeats: 22 Spacers: s1-s21 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 7459-8877 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: QWVC01000470.1 Clostridioides difficile strain LC1-18-0607 NODE_470_length_2612_cov_3.87606, whole genome shotgun sequence

⇒Summary: seq-len = 2612 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18-2354 bp Zoom in on locus 1 x36 CRISPR array Location: 18-2354 bp Num of repeats: 36 Spacers: s1-s35 CRISPR array Location: 18-2354 bp Num of repeats: 36 Spacers: s1-s35 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18-2354 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)