CRISPRone

CRISPRone report for GCA_007001365.1_ASM700136v1

♦ Seq 1: QWVM01000009.1 Clostridioides difficile strain LC1-11-0728 NODE_9_length_205112_cov_38.0413, whole genome shotgun sequence

⇒Summary: seq-len = 205112 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 113366-114185 bp Zoom in on locus 1 x13 CRISPR array Location: 113366-114185 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 113366-114185 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 113366-114185 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: QWVM01000003.1 Clostridioides difficile strain LC1-11-0728 NODE_3_length_380375_cov_36.859, whole genome shotgun sequence

⇒Summary: seq-len = 380375 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 97015-97109 bp Zoom in on locus 1 x2 CRISPR array Location: 97015-97109 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 97015-97109 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 97015-97109 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: QWVM01000001.1 Clostridioides difficile strain LC1-11-0728 NODE_1_length_488685_cov_41.6978, whole genome shotgun sequence

⇒Summary: seq-len = 488685 bp; # of CRISPR array = 1; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 162293-170158 bp 2 Locus 2: 243441-243936 bp Zoom in on locus 1 Zoom in on locus 2 x8 Gene: cd09641:cas3HD Type: Type-I Location: 162293-164701 bp Gene: cd09693:cas5 Type: Type-I Location: 164728-165525 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 165541-166554 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 166574-168049 bp Gene: pfam01881:cas6 Type: other Location: 168054-168791 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 169049-170158 bp CRISPR array Location: 243441-243936 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 243441-243936 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 243441-243936 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: QWVM01000005.1 Clostridioides difficile strain LC1-11-0728 NODE_5_length_259448_cov_37.5189, whole genome shotgun sequence

⇒Summary: seq-len = 259448 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 256154-256575 bp Zoom in on locus 1 x7 CRISPR array Location: 256154-256575 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 256154-256575 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 256154-256575 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: QWVM01000004.1 Clostridioides difficile strain LC1-11-0728 NODE_4_length_314796_cov_44.1042, whole genome shotgun sequence

⇒Summary: seq-len = 314796 bp; # of CRISPR array = 4; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 184513-184674 bp 2 Locus 2: 208583-214252 bp Zoom in on locus 1 x3 Zoom in on locus 2 x5 x5 x2 CRISPR array Location: 184513-184674 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 184513-184674 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 208583-208876 bp Num of repeats: 5 Spacers: s3-s6 CRISPR array Location: 208583-208876 bp Num of repeats: 5 Spacers: s3-s6 CRISPR array Location: 211519-211812 bp Num of repeats: 5 Spacers: s7-s10 CRISPR array Location: 211519-211812 bp Num of repeats: 5 Spacers: s7-s10 CRISPR array Location: 214159-214252 bp Num of repeats: 2 Spacers: s11-s11 CRISPR array Location: 214159-214252 bp Num of repeats: 2 Spacers: s11-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 184513-184674 bp]: array | spacers
           [Locus range 208583-208876 bp]: array | spacers
           [Locus range 211519-211812 bp]: array | spacers
           [Locus range 214159-214252 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: QWVM01000002.1 Clostridioides difficile strain LC1-11-0728 NODE_2_length_422687_cov_46.5858, whole genome shotgun sequence

⇒Summary: seq-len = 422687 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 248077-258190 bp Zoom in on locus 1 x9 CRISPR array Location: 248077-248625 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 248077-248625 bp Num of repeats: 9 Spacers: s1-s8 Gene: cd09725:cas2 Type: universal Location: 248809-249075 bp Gene: cd09722:cas1 Type: universal Location: 249078-250058 bp Gene: pfam01930:cas4 Type: Type-I Location: 250142-250579 bp Gene: COG1203:cas3 Type: Type-I Location: 250627-252948 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 252959-253660 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 253662-254576 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 254578-256455 bp Gene: pfam01881:cas6 Type: other Location: 256461-257255 bp Gene: pfam13280:WYL Type: other Location: 257276-258190 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 248077-248625 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: QWVM01000006.1 Clostridioides difficile strain LC1-11-0728 NODE_6_length_246350_cov_35.1689, whole genome shotgun sequence

⇒Summary: seq-len = 246350 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17762-18254 bp 2 Locus 2: 191850-193261 bp Zoom in on locus 1 x8 Zoom in on locus 2 x22 CRISPR array Location: 17762-18254 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 17762-18254 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 191850-193261 bp Num of repeats: 22 Spacers: s8-s28 CRISPR array Location: 191850-193261 bp Num of repeats: 22 Spacers: s8-s28 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 17762-18254 bp]: array | spacers
           [Locus range 191850-193261 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)