CRISPRone

CRISPRone report for GCA_007001555.1_ASM700155v1

♦ Seq 1: SEQY01000001.1 Clostridioides difficile strain LC4-009-5 NODE_1_length_481821_cov_189.629, whole genome shotgun sequence

⇒Summary: seq-len = 481821 bp; # of CRISPR array = 1; # of cas gene = 6  (type I, III) 

⇒Cas loci & CRISPR arrays: gff file

⇒Predicted cas genes: protein | gene

⇒CRISPR arrays :
           [Locus range 239569-240065 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: SEQY01000008.1 Clostridioides difficile strain LC4-009-5 NODE_8_length_209579_cov_178.345, whole genome shotgun sequence

⇒Summary: seq-len = 209579 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 90882-91705 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: SEQY01000024.1 Clostridioides difficile strain LC4-009-5 NODE_24_length_34066_cov_224.096, whole genome shotgun sequence

⇒Summary: seq-len = 34066 bp; # of CRISPR array = 4; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 9897-10582 bp]: array | spacers
           [Locus range 12285-12510 bp]: array | spacers
           [Locus range 14134-14757 bp]: array | spacers
           [Locus range 16451-17271 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: SEQY01000002.1 Clostridioides difficile strain LC4-009-5 NODE_2_length_390384_cov_209.937, whole genome shotgun sequence

⇒Summary: seq-len = 390384 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) 

⇒Cas loci & CRISPR arrays: gff file

⇒Predicted cas genes: protein | gene

⇒CRISPR arrays :
           [Locus range 200355-200779 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: SEQY01000006.1 Clostridioides difficile strain LC4-009-5 NODE_6_length_260344_cov_176.826, whole genome shotgun sequence

⇒Summary: seq-len = 260344 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 2939-3687 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: SEQY01000014.1 Clostridioides difficile strain LC4-009-5 NODE_14_length_125972_cov_172.446, whole genome shotgun sequence

⇒Summary: seq-len = 125972 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 60730-62131 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: SEQY01000009.1 Clostridioides difficile strain LC4-009-5 NODE_9_length_175396_cov_174.32, whole genome shotgun sequence

⇒Summary: seq-len = 175396 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 18212-20021 bp]: array | spacers
           [Locus range 100632-100922 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: SEQY01000003.1 Clostridioides difficile strain LC4-009-5 NODE_3_length_367740_cov_170.828, whole genome shotgun sequence

⇒Summary: seq-len = 367740 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 114328-114683 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)