CRISPRone

CRISPRone report for GCA_007001605.1_ASM700160v1

♦ Seq 1: SEQV01000014.1 Clostridioides difficile strain LC4-009-1 NODE_14_length_115584_cov_46.863, whole genome shotgun sequence

⇒Summary: seq-len = 115584 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 895-1185 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: SEQV01000004.1 Clostridioides difficile strain LC4-009-1 NODE_4_length_297098_cov_42.271, whole genome shotgun sequence

⇒Summary: seq-len = 297098 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 17838-19647 bp]: array | spacers
           [Locus range 100258-100548 bp]: array | spacers
           [Locus range 235622-236957 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: SEQV01000002.1 Clostridioides difficile strain LC4-009-1 NODE_2_length_475986_cov_53.6716, whole genome shotgun sequence

⇒Summary: seq-len = 475986 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) 

⇒Cas loci & CRISPR arrays: gff file

⇒Predicted cas genes: protein | gene

⇒CRISPR arrays :
           [Locus range 275275-275632 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: SEQV01000026.1 Clostridioides difficile strain LC4-009-1 NODE_26_length_33972_cov_61.0879, whole genome shotgun sequence

⇒Summary: seq-len = 33972 bp; # of CRISPR array = 4; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 9803-10488 bp]: array | spacers
           [Locus range 12191-12416 bp]: array | spacers
           [Locus range 14040-14663 bp]: array | spacers
           [Locus range 16357-17177 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: SEQV01000001.1 Clostridioides difficile strain LC4-009-1 NODE_1_length_481817_cov_47.6288, whole genome shotgun sequence

⇒Summary: seq-len = 481817 bp; # of CRISPR array = 1; # of cas gene = 6  (type I, III) 

⇒Cas loci & CRISPR arrays: gff file

⇒Predicted cas genes: protein | gene

⇒CRISPR arrays :
           [Locus range 239565-240061 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: SEQV01000008.1 Clostridioides difficile strain LC4-009-1 NODE_8_length_178144_cov_44.6278, whole genome shotgun sequence

⇒Summary: seq-len = 178144 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 117875-118699 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: SEQV01000009.1 Clostridioides difficile strain LC4-009-1 NODE_9_length_177108_cov_43.9152, whole genome shotgun sequence

⇒Summary: seq-len = 177108 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 2939-3687 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)