CRISPRone

CRISPRone report for GCA_007001655.1_ASM700165v1

♦ Seq 1: SEQT01000007.1 Clostridioides difficile strain LC3P-142-8 NODE_7_length_171229_cov_12.0891, whole genome shotgun sequence

⇒Summary: seq-len = 171229 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 104855-105014 bp 2 Locus 2: 155927-157399 bp Zoom in on locus 1 x3 Zoom in on locus 2 x23 CRISPR array Location: 104855-105014 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 104855-105014 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 155927-157399 bp Num of repeats: 23 Spacers: s3-s24 CRISPR array Location: 155927-157399 bp Num of repeats: 23 Spacers: s3-s24 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 104855-105014 bp]: array | spacers
           [Locus range 155927-157399 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: SEQT01000002.1 Clostridioides difficile strain LC3P-142-8 NODE_2_length_394761_cov_17.9283, whole genome shotgun sequence

⇒Summary: seq-len = 394761 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 306049-317258 bp Zoom in on locus 1 x26 Gene: pfam13280:WYL Type: other Location: 306049-306936 bp Gene: pfam01881:cas6 Type: other Location: 307014-307751 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 307757-309634 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 309636-310550 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 310552-311253 bp Gene: COG1203:cas3 Type: Type-I Location: 311264-313585 bp Gene: pfam01930:cas4 Type: Type-I Location: 313600-314151 bp Gene: cd09722:cas1 Type: universal Location: 314154-315134 bp Gene: cd09725:cas2 Type: universal Location: 315137-315403 bp CRISPR array Location: 315587-317258 bp Num of repeats: 26 Spacers: s1-s25 CRISPR array Location: 315587-317258 bp Num of repeats: 26 Spacers: s1-s25 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 315587-317258 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: SEQT01000004.1 Clostridioides difficile strain LC3P-142-8 NODE_4_length_277409_cov_11.7839, whole genome shotgun sequence

⇒Summary: seq-len = 277409 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 60641-61000 bp 2 Locus 2: 269114-269673 bp Zoom in on locus 1 x6 Zoom in on locus 2 x9 CRISPR array Location: 60641-61000 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 60641-61000 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 269114-269673 bp Num of repeats: 9 Spacers: s6-s13 CRISPR array Location: 269114-269673 bp Num of repeats: 9 Spacers: s6-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 60641-61000 bp]: array | spacers
           [Locus range 269114-269673 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: SEQT01000006.1 Clostridioides difficile strain LC3P-142-8 NODE_6_length_178568_cov_10.7318, whole genome shotgun sequence

⇒Summary: seq-len = 178568 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38255-39471 bp Zoom in on locus 1 x19 CRISPR array Location: 38255-39471 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 38255-39471 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 38255-39471 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: SEQT01000001.1 Clostridioides difficile strain LC3P-142-8 NODE_1_length_501737_cov_13.1841, whole genome shotgun sequence

⇒Summary: seq-len = 501737 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 12037-13051 bp 2 Locus 2: 175028-182893 bp 3 Locus 3: 256161-256718 bp Zoom in on locus 1 x16 Zoom in on locus 2 Zoom in on locus 3 x9 CRISPR array Location: 12037-13051 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 12037-13051 bp Num of repeats: 16 Spacers: s1-s15 Gene: cd09641:cas3HD Type: Type-I Location: 175028-177436 bp Gene: cd09693:cas5 Type: Type-I Location: 177463-178260 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 178276-179289 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 179309-180784 bp Gene: pfam01881:cas6 Type: other Location: 180789-181526 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 181784-182893 bp CRISPR array Location: 256161-256718 bp Num of repeats: 9 Spacers: s16-s23 CRISPR array Location: 256161-256718 bp Num of repeats: 9 Spacers: s16-s23 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 12037-13051 bp]: array | spacers
           [Locus range 256161-256718 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: SEQT01000010.1 Clostridioides difficile strain LC3P-142-8 NODE_10_length_133019_cov_11.3556, whole genome shotgun sequence

⇒Summary: seq-len = 133019 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 112753-113842 bp Zoom in on locus 1 x17 CRISPR array Location: 112753-113842 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 112753-113842 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 112753-113842 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)