CRISPRone

CRISPRone report for GCA_007001765.1_ASM700176v1

♦ Seq 1: SEQN01000007.1 Clostridioides difficile strain LC3P-142-2 NODE_7_length_241107_cov_11.6895, whole genome shotgun sequence

⇒Summary: seq-len = 241107 bp; # of CRISPR array = 1; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 531-1089 bp 2 Locus 2: 74356-82221 bp Zoom in on locus 1 x9 Zoom in on locus 2 CRISPR array Location: 531-1089 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 531-1089 bp Num of repeats: 9 Spacers: s1-s8 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 74356-75465 bp Gene: pfam01881:cas6 Type: other Location: 75723-76460 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 76465-77940 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 77960-78973 bp Gene: cd09693:cas5 Type: Type-I Location: 78989-79786 bp Gene: cd09641:cas3HD Type: Type-I Location: 79813-82221 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 531-1089 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: SEQN01000002.1 Clostridioides difficile strain LC3P-142-2 NODE_2_length_371801_cov_14.3462, whole genome shotgun sequence

⇒Summary: seq-len = 371801 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 283140-294349 bp Zoom in on locus 1 x26 Gene: pfam13280:WYL Type: other Location: 283140-284027 bp Gene: pfam01881:cas6 Type: other Location: 284105-284842 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 284848-286725 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 286727-287641 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 287643-288344 bp Gene: COG1203:cas3 Type: Type-I Location: 288355-290676 bp Gene: pfam01930:cas4 Type: Type-I Location: 290691-291242 bp Gene: cd09722:cas1 Type: universal Location: 291245-292225 bp Gene: cd09725:cas2 Type: universal Location: 292228-292494 bp CRISPR array Location: 292678-294349 bp Num of repeats: 26 Spacers: s1-s25 CRISPR array Location: 292678-294349 bp Num of repeats: 26 Spacers: s1-s25 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 292678-294349 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: SEQN01000010.1 Clostridioides difficile strain LC3P-142-2 NODE_10_length_154516_cov_10.9929, whole genome shotgun sequence

⇒Summary: seq-len = 154516 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17754-18844 bp Zoom in on locus 1 x17 CRISPR array Location: 17754-18844 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 17754-18844 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 17754-18844 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: SEQN01000003.1 Clostridioides difficile strain LC3P-142-2 NODE_3_length_366196_cov_11.7427, whole genome shotgun sequence

⇒Summary: seq-len = 366196 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 66239-66598 bp 2 Locus 2: 274712-275271 bp Zoom in on locus 1 x6 Zoom in on locus 2 x9 CRISPR array Location: 66239-66598 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 66239-66598 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 274712-275271 bp Num of repeats: 9 Spacers: s6-s13 CRISPR array Location: 274712-275271 bp Num of repeats: 9 Spacers: s6-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 66239-66598 bp]: array | spacers
           [Locus range 274712-275271 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: SEQN01000001.1 Clostridioides difficile strain LC3P-142-2 NODE_1_length_445842_cov_11.2051, whole genome shotgun sequence

⇒Summary: seq-len = 445842 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 44825-46298 bp 2 Locus 2: 97210-97370 bp 3 Locus 3: 406373-407588 bp Zoom in on locus 1 x23 Zoom in on locus 2 x3 Zoom in on locus 3 x19 CRISPR array Location: 44825-46298 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 44825-46298 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 97210-97370 bp Num of repeats: 3 Spacers: s23-s24 CRISPR array Location: 97210-97370 bp Num of repeats: 3 Spacers: s23-s24 CRISPR array Location: 406373-407588 bp Num of repeats: 19 Spacers: s25-s42 CRISPR array Location: 406373-407588 bp Num of repeats: 19 Spacers: s25-s42 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 44825-46298 bp]: array | spacers
           [Locus range 97210-97370 bp]: array | spacers
           [Locus range 406373-407588 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: SEQN01000005.1 Clostridioides difficile strain LC3P-142-2 NODE_5_length_301483_cov_12.3456, whole genome shotgun sequence

⇒Summary: seq-len = 301483 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 297364-298378 bp Zoom in on locus 1 x16 CRISPR array Location: 297364-298378 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 297364-298378 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 297364-298378 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)