CRISPRone

CRISPRone report for GCA_007001795.1_ASM700179v1

♦ Seq 1: SEQM01000013.1 Clostridioides difficile strain LC3P-142-1 NODE_13_length_143965_cov_13.0547, whole genome shotgun sequence

⇒Summary: seq-len = 143965 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 77505-88740 bp Zoom in on locus 1 x26 CRISPR array Location: 77505-79175 bp Num of repeats: 26 Spacers: s1-s25 CRISPR array Location: 77505-79175 bp Num of repeats: 26 Spacers: s1-s25 Gene: cd09725:cas2 Type: universal Location: 79359-79625 bp Gene: cd09722:cas1 Type: universal Location: 79628-80608 bp Gene: pfam01930:cas4 Type: Type-I Location: 80611-81129 bp Gene: COG1203:cas3 Type: Type-I Location: 81177-83498 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 83509-84210 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 84212-85126 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 85128-87005 bp Gene: pfam01881:cas6 Type: other Location: 87011-87805 bp Gene: pfam13280:WYL Type: other Location: 87826-88740 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 77505-79175 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: SEQM01000003.1 Clostridioides difficile strain LC3P-142-1 NODE_3_length_269884_cov_10.9648, whole genome shotgun sequence

⇒Summary: seq-len = 269884 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 178322-178881 bp Zoom in on locus 1 x9 CRISPR array Location: 178322-178881 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 178322-178881 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 178322-178881 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: SEQM01000022.1 Clostridioides difficile strain LC3P-142-1 NODE_22_length_27749_cov_11.6547, whole genome shotgun sequence

⇒Summary: seq-len = 27749 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8907-9996 bp Zoom in on locus 1 x17 CRISPR array Location: 8907-9996 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 8907-9996 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 8907-9996 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: SEQM01000002.1 Clostridioides difficile strain LC3P-142-1 NODE_2_length_447249_cov_12.5733, whole genome shotgun sequence

⇒Summary: seq-len = 447249 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 46232-47705 bp 2 Locus 2: 98617-98777 bp 3 Locus 3: 407780-408995 bp Zoom in on locus 1 x23 Zoom in on locus 2 x3 Zoom in on locus 3 x19 CRISPR array Location: 46232-47705 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 46232-47705 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 98617-98777 bp Num of repeats: 3 Spacers: s23-s24 CRISPR array Location: 98617-98777 bp Num of repeats: 3 Spacers: s23-s24 CRISPR array Location: 407780-408995 bp Num of repeats: 19 Spacers: s25-s42 CRISPR array Location: 407780-408995 bp Num of repeats: 19 Spacers: s25-s42 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 46232-47705 bp]: array | spacers
           [Locus range 98617-98777 bp]: array | spacers
           [Locus range 407780-408995 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: SEQM01000001.1 Clostridioides difficile strain LC3P-142-1 NODE_1_length_613330_cov_20.4943, whole genome shotgun sequence

⇒Summary: seq-len = 613330 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 123731-124745 bp 2 Locus 2: 286722-294587 bp 3 Locus 3: 367855-368412 bp Zoom in on locus 1 x16 Zoom in on locus 2 Zoom in on locus 3 x9 CRISPR array Location: 123731-124745 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 123731-124745 bp Num of repeats: 16 Spacers: s1-s15 Gene: cd09641:cas3HD Type: Type-I Location: 286722-289130 bp Gene: cd09693:cas5 Type: Type-I Location: 289157-289954 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 289970-290983 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 291003-292478 bp Gene: pfam01881:cas6 Type: other Location: 292483-293220 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 293478-294587 bp CRISPR array Location: 367855-368412 bp Num of repeats: 9 Spacers: s16-s23 CRISPR array Location: 367855-368412 bp Num of repeats: 9 Spacers: s16-s23 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 123731-124745 bp]: array | spacers
           [Locus range 367855-368412 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: SEQM01000006.1 Clostridioides difficile strain LC3P-142-1 NODE_6_length_216087_cov_14.4835, whole genome shotgun sequence

⇒Summary: seq-len = 216087 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 185935-186294 bp Zoom in on locus 1 x6 CRISPR array Location: 185935-186294 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 185935-186294 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 185935-186294 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)