CRISPRone

CRISPRone report for GCA_007001815.1_ASM700181v1

♦ Seq 1: SEQK01000001.1 Clostridioides difficile strain LC3P-135-7 NODE_1_length_1117127_cov_21.1947, whole genome shotgun sequence

⇒Summary: seq-len = 1117127 bp; # of CRISPR array = 3; # of cas gene = 6  (type I, III) 

⇒Cas loci & CRISPR arrays: gff file

⇒Predicted cas genes: protein | gene

⇒CRISPR arrays :
           [Locus range 244375-244469 bp]: array | spacers
           [Locus range 491114-491737 bp]: array | spacers
           [Locus range 852388-852483 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: SEQK01000013.1 Clostridioides difficile strain LC3P-135-7 NODE_13_length_96993_cov_19.0395, whole genome shotgun sequence

⇒Summary: seq-len = 96993 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 17752-18376 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: SEQK01000024.1 Clostridioides difficile strain LC3P-135-7 NODE_24_length_7502_cov_23.3258, whole genome shotgun sequence

⇒Summary: seq-len = 7502 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 98-459 bp]: array | spacers
           [Locus range 1062-1421 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: SEQK01000015.1 Clostridioides difficile strain LC3P-135-7 NODE_15_length_78632_cov_41.214, whole genome shotgun sequence

⇒Summary: seq-len = 78632 bp; # of CRISPR array = 0; # of cas gene = 3  (type IV) 

⇒Cas loci & CRISPR arrays: gff file

⇒Predicted cas genes: protein | gene

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: SEQK01000017.1 Clostridioides difficile strain LC3P-135-7 NODE_17_length_57847_cov_17.6132, whole genome shotgun sequence

⇒Summary: seq-len = 57847 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 3822-4835 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: SEQK01000003.1 Clostridioides difficile strain LC3P-135-7 NODE_3_length_465505_cov_27.1794, whole genome shotgun sequence

⇒Summary: seq-len = 465505 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) 

⇒Cas loci & CRISPR arrays: gff file

⇒Predicted cas genes: protein | gene

⇒CRISPR arrays :
           [Locus range 296153-297367 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: SEQK01000006.1 Clostridioides difficile strain LC3P-135-7 NODE_6_length_200632_cov_21.3112, whole genome shotgun sequence

⇒Summary: seq-len = 200632 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 108652-109474 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: SEQK01000004.1 Clostridioides difficile strain LC3P-135-7 NODE_4_length_319021_cov_26.5334, whole genome shotgun sequence

⇒Summary: seq-len = 319021 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) 

⇒Cas loci & CRISPR arrays: gff file

⇒Predicted cas genes: protein | gene

⇒CRISPR arrays :
           [Locus range 64666-66007 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: SEQK01000005.1 Clostridioides difficile strain LC3P-135-7 NODE_5_length_221035_cov_23.5124, whole genome shotgun sequence

⇒Summary: seq-len = 221035 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 190408-190962 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)