CRISPRone

CRISPRone report for GCA_007001845.1_ASM700184v1

♦ Seq 1: SEQJ01000002.1 Clostridioides difficile strain LC3P-135-6 NODE_2_length_557098_cov_14.5225, whole genome shotgun sequence

⇒Summary: seq-len = 557098 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 190306-190860 bp 2 Locus 2: 386427-387249 bp Zoom in on locus 1 x9 Zoom in on locus 2 x13 CRISPR array Location: 190306-190860 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 190306-190860 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 386427-387249 bp Num of repeats: 13 Spacers: s9-s20 CRISPR array Location: 386427-387249 bp Num of repeats: 13 Spacers: s9-s20 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 190306-190860 bp]: array | spacers
           [Locus range 386427-387249 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: SEQJ01000014.1 Clostridioides difficile strain LC3P-135-6 NODE_14_length_72403_cov_47.7271, whole genome shotgun sequence

⇒Summary: seq-len = 72403 bp; # of CRISPR array = 0; # of cas gene = 3  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 24630-27261 bp Zoom in on locus 1 Gene: mkCas0093:csf3gr5 Type: Subtype-IV-A Location: 24630-25301 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 25321-26148 bp Gene: unk Type: unknown Location: 26138-26530 bp Gene: mkCas0068:csf1gr8 Type: Subtype-IV-A Location: 26533-27261 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: SEQJ01000026.1 Clostridioides difficile strain LC3P-135-6 NODE_26_length_7502_cov_16.4024, whole genome shotgun sequence

⇒Summary: seq-len = 7502 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 98-1421 bp Zoom in on locus 1 x6 x6 CRISPR array Location: 98-459 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 98-459 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 1062-1421 bp Num of repeats: 6 Spacers: s6-s10 CRISPR array Location: 1062-1421 bp Num of repeats: 6 Spacers: s6-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 98-459 bp]: array | spacers
           [Locus range 1062-1421 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: SEQJ01000004.1 Clostridioides difficile strain LC3P-135-6 NODE_4_length_428543_cov_12.9732, whole genome shotgun sequence

⇒Summary: seq-len = 428543 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 104072-104167 bp 2 Locus 2: 422516-423528 bp Zoom in on locus 1 x2 Zoom in on locus 2 x16 CRISPR array Location: 104072-104167 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 104072-104167 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 422516-423528 bp Num of repeats: 16 Spacers: s2-s16 CRISPR array Location: 422516-423528 bp Num of repeats: 16 Spacers: s2-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 104072-104167 bp]: array | spacers
           [Locus range 422516-423528 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: SEQJ01000013.1 Clostridioides difficile strain LC3P-135-6 NODE_13_length_97442_cov_13.4059, whole genome shotgun sequence

⇒Summary: seq-len = 97442 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 78619-79242 bp Zoom in on locus 1 x10 CRISPR array Location: 78619-79242 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 78619-79242 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 78619-79242 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: SEQJ01000003.1 Clostridioides difficile strain LC3P-135-6 NODE_3_length_542670_cov_17.0524, whole genome shotgun sequence

⇒Summary: seq-len = 542670 bp; # of CRISPR array = 2; # of cas gene = 14  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 253779-264657 bp 2 Locus 2: 487906-495322 bp Zoom in on locus 1 x21 Zoom in on locus 2 x19 CRISPR array Location: 253779-255119 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 253779-255119 bp Num of repeats: 21 Spacers: s1-s20 Gene: cd09725:cas2 Type: universal Location: 255303-255569 bp Gene: cd09722:cas1 Type: universal Location: 255572-256552 bp Gene: pfam01930:cas4 Type: Type-I Location: 256555-257073 bp Gene: COG1203:cas3 Type: Type-I Location: 257121-259442 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 259453-260154 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 260156-261070 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 261072-262922 bp Gene: pfam01881:cas6 Type: other Location: 262928-263722 bp Gene: pfam13280:WYL Type: other Location: 263743-264657 bp CRISPR array Location: 487906-489119 bp Num of repeats: 19 Spacers: s21-s38 CRISPR array Location: 487906-489119 bp Num of repeats: 19 Spacers: s21-s38 Gene: COG1203:cas3 Type: Type-I Location: 489686-491668 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 491679-492749 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 492770-493918 bp Gene: pfam01881:cas6 Type: other Location: 493920-494684 bp Gene: cd09693:cas5 Type: Type-I Location: 494675-495322 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 253779-255119 bp]: array | spacers
           [Locus range 487906-489119 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: SEQJ01000001.1 Clostridioides difficile strain LC3P-135-6 NODE_1_length_748711_cov_14.5605, whole genome shotgun sequence

⇒Summary: seq-len = 748711 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 244842-244936 bp 2 Locus 2: 318206-326071 bp 3 Locus 3: 491581-492204 bp Zoom in on locus 1 x2 Zoom in on locus 2 Zoom in on locus 3 x10 CRISPR array Location: 244842-244936 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 244842-244936 bp Num of repeats: 2 Spacers: s1-s1 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 318206-319315 bp Gene: pfam01881:cas6 Type: other Location: 319573-320310 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 320315-321790 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 321810-322823 bp Gene: cd09693:cas5 Type: Type-I Location: 322839-323636 bp Gene: cd09641:cas3HD Type: Type-I Location: 323663-326071 bp CRISPR array Location: 491581-492204 bp Num of repeats: 10 Spacers: s2-s10 CRISPR array Location: 491581-492204 bp Num of repeats: 10 Spacers: s2-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 244842-244936 bp]: array | spacers
           [Locus range 491581-492204 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)