CRISPRone

CRISPRone report for GCA_007001865.1_ASM700186v1

♦ Seq 1: SEQI01000001.1 Clostridioides difficile strain LC3P-135-5 NODE_1_length_504266_cov_12.5689, whole genome shotgun sequence

⇒Summary: seq-len = 504266 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) 

⇒Cas loci & CRISPR arrays: gff file

⇒Predicted cas genes: protein | gene

⇒CRISPR arrays :
           [Locus range 244677-244771 bp]: array | spacers
           [Locus range 491416-492039 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: SEQI01000028.1 Clostridioides difficile strain LC3P-135-5 NODE_28_length_23799_cov_9.87221, whole genome shotgun sequence

⇒Summary: seq-len = 23799 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 18966-19978 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: SEQI01000002.1 Clostridioides difficile strain LC3P-135-5 NODE_2_length_437366_cov_13.6383, whole genome shotgun sequence

⇒Summary: seq-len = 437366 bp; # of CRISPR array = 2; # of cas gene = 14  (type I) 

⇒Cas loci & CRISPR arrays: gff file

⇒Predicted cas genes: protein | gene

⇒CRISPR arrays :
           [Locus range 148589-149929 bp]: array | spacers
           [Locus range 382716-383929 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: SEQI01000018.1 Clostridioides difficile strain LC3P-135-5 NODE_18_length_78632_cov_35.5632, whole genome shotgun sequence

⇒Summary: seq-len = 78632 bp; # of CRISPR array = 0; # of cas gene = 3  (type IV) 

⇒Cas loci & CRISPR arrays: gff file

⇒Predicted cas genes: protein | gene

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: SEQI01000004.1 Clostridioides difficile strain LC3P-135-5 NODE_4_length_277318_cov_12.1244, whole genome shotgun sequence

⇒Summary: seq-len = 277318 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 190388-190942 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: SEQI01000016.1 Clostridioides difficile strain LC3P-135-5 NODE_16_length_97442_cov_10.9251, whole genome shotgun sequence

⇒Summary: seq-len = 97442 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 18201-18825 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: SEQI01000003.1 Clostridioides difficile strain LC3P-135-5 NODE_3_length_402248_cov_11.1715, whole genome shotgun sequence

⇒Summary: seq-len = 402248 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 299562-299656 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: SEQI01000010.1 Clostridioides difficile strain LC3P-135-5 NODE_10_length_140676_cov_11.0747, whole genome shotgun sequence

⇒Summary: seq-len = 140676 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 48661-49483 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: SEQI01000034.1 Clostridioides difficile strain LC3P-135-5 NODE_34_length_7486_cov_13.0898, whole genome shotgun sequence

⇒Summary: seq-len = 7486 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 6083-6441 bp]: array | spacers
           [Locus range 7045-7405 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)