CRISPRone

CRISPRone report for GCA_007001905.1_ASM700190v1

♦ Seq 1: SEQH01000006.1 Clostridioides difficile strain LC3P-135-4 NODE_6_length_201035_cov_19.2017, whole genome shotgun sequence

⇒Summary: seq-len = 201035 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 109020-109842 bp Zoom in on locus 1 x13 CRISPR array Location: 109020-109842 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 109020-109842 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 109020-109842 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: SEQH01000024.1 Clostridioides difficile strain LC3P-135-4 NODE_24_length_9769_cov_22.5384, whole genome shotgun sequence

⇒Summary: seq-len = 9769 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2365-3688 bp Zoom in on locus 1 x6 x6 CRISPR array Location: 2365-2726 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 2365-2726 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 3329-3688 bp Num of repeats: 6 Spacers: s6-s10 CRISPR array Location: 3329-3688 bp Num of repeats: 6 Spacers: s6-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2365-2726 bp]: array | spacers
           [Locus range 3329-3688 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: SEQH01000001.1 Clostridioides difficile strain LC3P-135-4 NODE_1_length_784650_cov_25.439, whole genome shotgun sequence

⇒Summary: seq-len = 784650 bp; # of CRISPR array = 2; # of cas gene = 14  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 253120-263998 bp 2 Locus 2: 487247-494663 bp Zoom in on locus 1 x21 Zoom in on locus 2 x19 CRISPR array Location: 253120-254460 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 253120-254460 bp Num of repeats: 21 Spacers: s1-s20 Gene: cd09725:cas2 Type: universal Location: 254644-254910 bp Gene: cd09722:cas1 Type: universal Location: 254913-255893 bp Gene: pfam01930:cas4 Type: Type-I Location: 255896-256414 bp Gene: COG1203:cas3 Type: Type-I Location: 256462-258783 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 258794-259495 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 259497-260411 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 260413-262263 bp Gene: pfam01881:cas6 Type: other Location: 262269-263063 bp Gene: pfam13280:WYL Type: other Location: 263084-263998 bp CRISPR array Location: 487247-488460 bp Num of repeats: 19 Spacers: s21-s38 CRISPR array Location: 487247-488460 bp Num of repeats: 19 Spacers: s21-s38 Gene: COG1203:cas3 Type: Type-I Location: 489027-491009 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 491020-492090 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 492111-493259 bp Gene: pfam01881:cas6 Type: other Location: 493261-494025 bp Gene: cd09693:cas5 Type: Type-I Location: 494016-494663 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 253120-254460 bp]: array | spacers
           [Locus range 487247-488460 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: SEQH01000015.1 Clostridioides difficile strain LC3P-135-4 NODE_15_length_78632_cov_64.7026, whole genome shotgun sequence

⇒Summary: seq-len = 78632 bp; # of CRISPR array = 0; # of cas gene = 3  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 65047-67678 bp Zoom in on locus 1 Gene: mkCas0068:csf1gr8 Type: Subtype-IV-A Location: 65047-65775 bp Gene: unk Type: unknown Location: 65778-66170 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 66160-66987 bp Gene: mkCas0093:csf3gr5 Type: Subtype-IV-A Location: 67007-67678 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: SEQH01000005.1 Clostridioides difficile strain LC3P-135-4 NODE_5_length_277338_cov_21.6756, whole genome shotgun sequence

⇒Summary: seq-len = 277338 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 86378-86931 bp Zoom in on locus 1 x9 CRISPR array Location: 86378-86931 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 86378-86931 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 86378-86931 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: SEQH01000003.1 Clostridioides difficile strain LC3P-135-4 NODE_3_length_548814_cov_19.6533, whole genome shotgun sequence

⇒Summary: seq-len = 548814 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 104072-104167 bp 2 Locus 2: 422516-423528 bp Zoom in on locus 1 x2 Zoom in on locus 2 x16 CRISPR array Location: 104072-104167 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 104072-104167 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 422516-423528 bp Num of repeats: 16 Spacers: s2-s16 CRISPR array Location: 422516-423528 bp Num of repeats: 16 Spacers: s2-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 104072-104167 bp]: array | spacers
           [Locus range 422516-423528 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: SEQH01000013.1 Clostridioides difficile strain LC3P-135-4 NODE_13_length_97442_cov_19.5651, whole genome shotgun sequence

⇒Summary: seq-len = 97442 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18201-18825 bp Zoom in on locus 1 x10 CRISPR array Location: 18201-18825 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 18201-18825 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18201-18825 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: SEQH01000002.1 Clostridioides difficile strain LC3P-135-4 NODE_2_length_748244_cov_21.3281, whole genome shotgun sequence

⇒Summary: seq-len = 748244 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 244375-244469 bp 2 Locus 2: 317739-325604 bp 3 Locus 3: 491114-491737 bp Zoom in on locus 1 x2 Zoom in on locus 2 Zoom in on locus 3 x10 CRISPR array Location: 244375-244469 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 244375-244469 bp Num of repeats: 2 Spacers: s1-s1 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 317739-318848 bp Gene: pfam01881:cas6 Type: other Location: 319106-319843 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 319848-321323 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 321343-322356 bp Gene: cd09693:cas5 Type: Type-I Location: 322372-323169 bp Gene: cd09641:cas3HD Type: Type-I Location: 323196-325604 bp CRISPR array Location: 491114-491737 bp Num of repeats: 10 Spacers: s2-s10 CRISPR array Location: 491114-491737 bp Num of repeats: 10 Spacers: s2-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 244375-244469 bp]: array | spacers
           [Locus range 491114-491737 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)